Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4919 ATGGGTCGAAAGAAGATTAAGATGGAGCTTGTGAAAGACCCCAACACGAGGCAGGTCACATTCTCCAAGCGTCGAACCGGCTTATTCAAGAAAACAAATGAGTTATCCATCATGTGTGGAACAGAAATTGCTGTTGTTGTATTCTCCCCCGGGAACAAGCCTTACTCCTATGGGCACCCAAGTGTGGATGCTGTTGCGGCCAAGTATCTTCAAATAGAGCCCAATTCTGATGATGATGCCCAAGGTGGTAGCACTAGCAACCCCTCTGCTGACGTTTTTGACATGGACCAACAGAATCTAGAACTTGCTGATGTGATGGCCCAGATTCGTGAGGAAGAAAAGAAGGCTAAGGTGCTTGCTGAGACCCTGAAAGAACAGCAAGTGACTATACGCTCTGAGTATCAAGACTTGAATGATTGTTATGGAGAGCTCCAAGGTATGGTGGAAAAGCGTCTCACTGAGTTTGAGATAGCAGAACTTATGGTCCTTCTTTCGGAAGGAAAAGTGGAAGGAATGACTGTGGAAAACAAAGATGAAAAGAAGAAATAG 549 0.4517 MGRKKIKMELVKDPNTRQVTFSKRRTGLFKKTNELSIMCGTEIAVVVFSPGNKPYSYGHPSVDAVAAKYLQIEPNSDDDAQGGSTSNPSADVFDMDQQNLELADVMAQIREEEKKAKVLAETLKEQQVTIRSEYQDLNDCYGELQGMVEKRLTEFEIAELMVLLSEGKVEGMTVENKDEKKK* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4919 182 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja3g4919 182 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja3g4919 182 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja3g4919 182 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 173 - -
Lja3g4919 182 Coils Coil 95 129 - -
Lja3g4919 182 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja3g4919 182 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja3g4919 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Lja3g4919 182 PANTHER MADS BOX PROTEIN 2 173 - -
Lja3g4919 182 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Lja3g4919 182 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4919 Lja-Chr3 91246444 91247016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4919 1 165 Type I MADS-box Gene Family AT2G34440 40.000 5.99e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja3g4919 SRF-TF 6.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4919 - - gmx:100791127 189.504