Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4912 ATGGCGCAGAAAAATCAGCTTAAAAAGGATACTAAAGAGTTGGAGTTTTTCACTGAGTTGGATGCCAATAGATACAAGGTTCTTGAGGTTATAGGGAAGGGCAGTTACGGGGTTGTTTGTGCGGCAATTGATAGGCACACTGGGGAGAAGGTTGCCATAAAGAGGATACATAATGCCTTTGAGAATATCTCTGATGCTATTAGAATCCTGCGTGAAATCAAGTTGCTAAGGCTTTTAAGACACGCTGATATCGTTGAGATTAAGAGAATCGTGTTGCCACGTTCGAAGAGGGAATTTAAGGATATTTATGTAGTTTTTGAGCTCATGGACTCTGATCTTCATCAAGTCATCAAAGTTAATAATGACTTGACCGGCGAACACCATCGGTTTTTTCTTTATCAAATGCTACGTGCCTTGAAGTATATGCATACAGCTAATGTGTATCACAGAGATCTTAAACCCAAGAATATACTGGCTAACGCAAACTGCAAACTTAAAGTTTGTGATTTTGGACTGGCACGAGTTGCATTCAATGATTCCCCGACAACAATATATTGGACGGATTATGTTGCTACAAGGTGGTACAGAGCACCAGAACTGTGTGGATTATTCTTTTCTCAGTATACACCTGCAATTGATATATGGAGCATTGGATGCATTTTTGCCGAGGTGCTGATTGGGAAGCCATTGTTTCCTGGTAAAAGTGTTATGCATCAATTAGATTTGATTACTGATCTTCTTGGGACACCATCACCTGAAACTATCATGGGAGTTCGACATGAAAATGCAAAGAAGTACTTGACGAGAATGCGGAAGAAACCTCCTGTGTCATTTGAACATAAATTTCCAAATGCTGATCCGTTGGCCCTTCGCCTTCTGCAAAGGCTTCTAGCATTTGATCCAAAGGATCGGCCAACTGCTGAAGAGGCACTAGCTGATCCTTACTTCAAGGGATTGGCCAAAGTTGAGAGAGAACCTTCGTGTAAGCCGATTTCACAAATGGAATTTGAATTTGAGAGGAGACAGGTGACAAAGGAGGATGTTAGAGAACTAATATATCGGGAAATGCTGGAATATCATCCTCAACTGCTTAAAGACTACATGAGTGGAGCTGAATGTGCAAGCTTCATCTATCCTAGTGCAGTTGATCAATTCCGAAAGCAATTTTCTGATCTCGAGGAAAATCATGGTAAAAGTGGGCCAGTGCTTCCTTCTGAAAGAAAGCATGCATCCCTTCCAAGGTCAATTGGTCACTCTACTACAATTCCTCCCAGTACCTACTCAACCCTTGCTTTGTATGGGAACAAGCAAATTTTAGAAGAGGCATCTAAGAGTTCGAGAGGGGCGGGACCAAATTCTGGAAATCAATATAGGGCCATACAACATCCGCCACGGGTGCCAGCAAAACCAGTGAGAGCTGTTGGGCCAGTTCTACACTACGAGGATGAGAGAAACAAGAGAGTTTACCAAAATTCTCCTAAAGCAGTTTTGACGCACTCTTTATTTAGGTCTCATACCCTAGACCCAAAGAGTACATCAGATTCAGGCAAGGACTTTTCACAAGGAAAGAACAATAATAACGTAAATGAGCCTGTGGCAGGAGTTATTGACGCAAAACTGCTGCAGGCGCAATCTCAACTTGGAGCAGTTGATGCTGCAGCCGTAGCTGTTACCACTCATGGTCGCAGGTATTCAAGAGGCGTGCATTGTGGATTGTCATAG 1722 0.4251 MAQKNQLKKDTKELEFFTELDANRYKVLEVIGKGSYGVVCAAIDRHTGEKVAIKRIHNAFENISDAIRILREIKLLRLLRHADIVEIKRIVLPRSKREFKDIYVVFELMDSDLHQVIKVNNDLTGEHHRFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFNDSPTTIYWTDYVATRWYRAPELCGLFFSQYTPAIDIWSIGCIFAEVLIGKPLFPGKSVMHQLDLITDLLGTPSPETIMGVRHENAKKYLTRMRKKPPVSFEHKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCKPISQMEFEFERRQVTKEDVRELIYREMLEYHPQLLKDYMSGAECASFIYPSAVDQFRKQFSDLEENHGKSGPVLPSERKHASLPRSIGHSTTIPPSTYSTLALYGNKQILEEASKSSRGAGPNSGNQYRAIQHPPRVPAKPVRAVGPVLHYEDERNKRVYQNSPKAVLTHSLFRSHTLDPKSTSDSGKDFSQGKNNNNVNEPVAGVIDAKLLQAQSQLGAVDAAAVAVTTHGRRYSRGVHCGLS* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4912 573 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4912 573 MobiDBLite consensus disorder prediction 502 530 - -
Lja3g4912 573 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Lja3g4912 573 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 19 11 465 - -
Lja3g4912 573 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 465 - -
Lja3g4912 573 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Lja3g4912 573 MobiDBLite consensus disorder prediction 443 459 - -
Lja3g4912 573 MobiDBLite consensus disorder prediction 443 469 - -
Lja3g4912 573 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4912 573 MobiDBLite consensus disorder prediction 394 427 - -
Lja3g4912 573 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Lja3g4912 573 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lja3g4912 573 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Lja3g4912 573 CDD STKc_TDY_MAPK 24 361 - -
Lja3g4912 573 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4912 Lja-Chr3 91185450 91191945 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4912 3 548 MAP Kinase Gene Family AT1G53510 64.696 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Lja3g4912 Pkinase 4.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4912 - K04371 gmx:100800878 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4912 3 91185450 91191945 Lja3g4912 3 91185450 91191945 ECH