Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4909 ATGGATTCATTCCTCAACCACCTACCTCCCCTCAAGAGACACAGACTCATCCACCAACACCAAAACCAAAACACTCCAACCCCATCCTCACTCTTACCTGCAAAAAAACGCAAAGAGTCTCGAAACTCCGCCACTTCCCACACCAACGACACCGTTTCACAATCTCCCACTGTTTGTTATCCCCTACCCACTAAGAAAAGGGTCTTCGCCCTCCAACCTCATCCCCAAAACGACACCGTTTCGAGCTTTGACCTCAACGTCGAATACCAACCCTCTCCCAATCGCAAATCGCACAAAACTTCTGAAAAACCCGAACCAAAATCTGAATCCATACCCGAACCTGAATCCGTGCCCGAACACGAGTTTGAATCCGAACCAAAATCTGAATCCGATCCTAAATCCGTATCCGAACCCGAACCTGAACAACTGCAGCAAAATCAGCACGAACACGCGATCGACGACGATGGCGACGGTGATGAAGAAGACGGGATTCTATGCTGTGTATGCCAGAGCACTGACGGCGATGCTGAAGATCCGATCGTTTTCTGCGACGGATGCGATCTCATGGTGCACGCGTCCTGCTACGGGAACCCGCTGTCAACTTCGATCCCCGACGGCGACTGGTTCTGCGAACGGTGCCGATTCGGGGACCAAAACAGCGAGTGCCAGTTGTGTCCGGTGAAGGAGGGAGCGATGAAGCGGACGACGGAGGGAATGTGGGCCCATGTGGTGTGCGCGCTGATTGTGCCGGAGGTTTTCTTCGCTGACCCGGAAGGGAGGGATGGGATCGATTGCTCTAGGGTTCCGAAGAAGCGGTGGTCGGAGAAGTGCTATGTGTGTGGGTGCGGTGGTGGGTGTGCGGTGGTGTGCTCGGAGCCCAAGTGTGGGTTGGCTTTTCATGCTAGTTGTGCGATGAAGGAGGAGCTTTGTATTGAGTATAAGCAGGATAGAAAGGGTGCTACCATTGTTGCTGGGTTCTGTAAAACCCATAGTCTTCTGTGGGAGAAGCTATCCGGGAAATACAAAATTGTTGCAGTTGAAGATAAAAAGTAG 1053 0.5223 MDSFLNHLPPLKRHRLIHQHQNQNTPTPSSLLPAKKRKESRNSATSHTNDTVSQSPTVCYPLPTKKRVFALQPHPQNDTVSSFDLNVEYQPSPNRKSHKTSEKPEPKSESIPEPESVPEHEFESEPKSESDPKSVSEPEPEQLQQNQHEHAIDDDGDGDEEDGILCCVCQSTDGDAEDPIVFCDGCDLMVHASCYGNPLSTSIPDGDWFCERCRFGDQNSECQLCPVKEGAMKRTTEGMWAHVVCALIVPEVFFADPEGRDGIDCSRVPKKRWSEKCYVCGCGGGCAVVCSEPKCGLAFHASCAMKEELCIEYKQDRKGATIVAGFCKTHSLLWEKLSGKYKIVAVEDKK* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4909 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 332 IPR013083 -
Lja3g4909 350 ProSiteProfiles Extended PHD (ePHD) domain profile. 219 331 IPR034732 -
Lja3g4909 350 PANTHER PHD FINGER PROTEINS 127 347 - -
Lja3g4909 350 MobiDBLite consensus disorder prediction 45 59 - -
Lja3g4909 350 PANTHER PHD FINGER PROTEINS 3 103 - -
Lja3g4909 350 SUPERFAMILY FYVE/PHD zinc finger 156 225 IPR011011 -
Lja3g4909 350 MobiDBLite consensus disorder prediction 17 59 - -
Lja3g4909 350 ProSiteProfiles Zinc finger PHD-type profile. 163 216 IPR019787 -
Lja3g4909 350 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 3 103 - -
Lja3g4909 350 MobiDBLite consensus disorder prediction 74 94 - -
Lja3g4909 350 Pfam PHD-zinc-finger like domain 221 330 - -
Lja3g4909 350 CDD ePHD 222 330 - -
Lja3g4909 350 CDD PHD_BRPF_JADE_like 165 213 - -
Lja3g4909 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 218 IPR013083 -
Lja3g4909 350 MobiDBLite consensus disorder prediction 95 136 - -
Lja3g4909 350 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 127 347 - -
Lja3g4909 350 ProSitePatterns Zinc finger PHD-type signature. 166 213 IPR019786 -
Lja3g4909 350 MobiDBLite consensus disorder prediction 72 158 - -
Lja3g4909 350 SMART PHD_3 165 214 IPR001965 -
Lja3g4909 350 SMART PHD_3 276 331 IPR001965 -
Lja3g4909 350 Pfam PHD-finger 166 214 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4909 18 350 C2H2 Transcription Factor Family AT3G14740 48.256 4.39e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja3g4909 zf-HC5HC2H_2 3.6e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4909 K11380 - gmx:100802652 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4909 3 91164465 91166508 Lja3g4909 3 91164465 91166508 ECH