Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4904 ATGCCGGGAAACAAGTACAACGGCATCCCGGACGATCACTTTCCGCCGGGGCGGTTAGAGCGCCTCATGAGAGATCGGGAATTGCGGGAATTGCGAAAAAGAGGAGTTCATGATTCCGTAACGGAGAACGGCGGTGGCGGCGGTGAAGGGGTTGAGAAGGAGTTAAGGAAGGAAGAGGATAATAATGAAAATAATAATAGTGATAATAATGGTGTGGTTGAAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGAGAGGCAAGAAGGGAAGGGATATAGGCAGAGGCTATTGGTGGTGGCGAACAGGTTGCCAGTGTCAGCGGTTAGGAAAGGTGAGGATTCGTGGTCTCTCGAGATCAGTGCTGGTGGCCTCGTCAGCGCTCTGTTAGGTGTAAAGGAGTTTGAGGCAAGGTGGATAGGTTGGGCCGGTGTCAATGTACCAGATGAAATTGGACAGAAGGCACTTACTAAAGCATTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTGATGAAGAAATTGTTCATCAATATTACAATGGCTACTGCAACAACATCCTGTGGCCCCTTTTCCATTACCTTGGGCTTCCACAAGAAGATCGTCTTGCCACCACGCGTAGTTTTCAGTCTCAATTTGCAGCATATGAGAAAGCAAACCAAATGTTTGCTGATGTTGTGAACCAGCATTATGAAGAGGGTGATGTTGTATGGTGCCATGATTACCATCTCATGTTCCTTCCAAAATGCTTAAAGAAATACAACAGCAACATGAAAGTTGGATGGTTTCTCCACACCCCATTCCCGTCTTCTGAAATTCACAGGACACTGCCGTCTCGTTCAGAGCTCCTTCATTCTGTTCTTGCAGCTGATTTAGTTGGCTTTCACACCTATGATTATGCAAGACACTTTGTTAGTGCTTGTACTCGTATCCTTGGGCTTGAAGGTACACCTTATGGTGTTGAATATCAAGGGAAGCTGACTCGAGTAGCCGCATTTCCAATTGGGATAGACTCAGAACGGTTTATACGTGCACTTGACCTTCCCAAAGTAAAGGAGCACATTAAAGAATTACAAGAAAGATTTAAGGGCAGAAAGGTAATGTTAGGCGTCGACCGCCTTGATATGATCAAAGGCATCCCTCAGAAAATTCTCGCGTTTGAAAAGTTTTTGGAAGAAAATCCTAGTTGGCATGATAAAGTCGTTTTGCTTCAAATTGCTGTGCCAACAAGAACAGATGTTCCAGAGTATCAAAAGCTTACAAGTCAGGTTCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGATCATTGATTACTGTTCCTATACATCACCTGGATCGCTCTCTTGACTTTCATGCATTGTGTGCTTTGTATGCTGTTACTGATGTAGCGCTAGTCACATCTTTGAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTGGCCTGCCAAGAGAAAAAGAAAGGAGTTCTCATACTTAGTGAATTTGCTGGTGCAGCACAGTCTCTTGGTGCTGGGGCAATTCTTGTCAACCCTTGGAATGTTACAGAAGTTGCTACTGCAATTGGTCGGGCTTTGAACATGACACCTGCAGAAAGAGAAAAGAGACACAAGCATAATTATGTTCATGTAATATCCCACACTGCTCAAGAATGGGCAGGAACTTTTGTAAGTGAACTAAATGATACTGTTATTGAGGCACAACTAAGGACAAGACAAGTTCCGCCCCGGCTACCAACCAAGACAGCAATTGAACGTTTTCTGCAGTCAACTAATAGACTGCTCATTTTGGGATTCAGTGGAACTTTAACTGAACCAGTCGAGAAAACAGGTGATCAGATTAAAGAAATGGAACTTAAGGTGCACCCTGAACTGAGACAACCCTTGATGGCGCTTTGCAGTGATCCAAATACCACAGTGGTTGTGCTCAGTGGAAGTGGCAGAAAAGTCCTGGATGATAACTTCAAAGAATATGACATGTGGTTGGCTGCGGAGAACGGGATGTTTTTACAACCTTCAAAAGGTGAATGGATGACAACTATGCCAGAGCATCTGAATATGGAATGGGTTGACAGCGTAAAGCATGTTCTTGAGTACTTCACAGAAAGAACACCTCGGTCACATTTCGATTATGAAGAAAGGGAAACTTCACTTGTATGGAATTACAAATATGCAGATGTTGAGTTTGGAAAACTTCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGTCCGATTTCTAATGCTTCAGTTGAAGTTGTTCAAGGGAGCCGATCGGTTGAGGTTCGAGCTGTTGGTGTTACAAAGGGAGCAGCTATTGACCGCATCCTGGGGGAGATAGTCCACAGTAAATCCATGACATCGCCGATCGATTATGTTCTTTGTATAGGACATTTTCTGGGGAAGGATGAAGACATTTACTCCTTTTTTGAGCCGGATCTTCCTTCCATCGGTGTTAGCCTTCCCCGAAGTAAGGTATCAACAACAGATGCTGTTAAGTTTCCTGTTGATAGGAGACAGTCTTTGAAGACCCCGGCTAGTAAAAATGGAGCAAAGGCTTCACAAAACAAGGCACTGAGGGCAGTGACAAACTCTGAGAAGAAAGCAAACAACCATGTCTGCAGTGCGCCACGACGCCCCGCGCCACCTGAAAAGACATCATGGAACGTCCTTGATCTAAAGAAAGAGAATTATTTCTCATGTGCTGTTGGAAGACATAGAACAAATGCTCGGTACACTCTTGGTTCACCAGATGATGTGGTTGGTTTTCTGATGGAATTAGCGGATGCATCATTGTACTCTTCTCCACCAAGTTAA 2814 0.4453 MPGNKYNGIPDDHFPPGRLERLMRDRELRELRKRGVHDSVTENGGGGGEGVEKELRKEEDNNENNNSDNNGVVEGGGGGGGGGGERQEGKGYRQRLLVVANRLPVSAVRKGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYEKANQMFADVVNQHYEEGDVVWCHDYHLMFLPKCLKKYNSNMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPYGVEYQGKLTRVAAFPIGIDSERFIRALDLPKVKEHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPSWHDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLITVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGAILVNPWNVTEVATAIGRALNMTPAEREKRHKHNYVHVISHTAQEWAGTFVSELNDTVIEAQLRTRQVPPRLPTKTAIERFLQSTNRLLILGFSGTLTEPVEKTGDQIKEMELKVHPELRQPLMALCSDPNTTVVVLSGSGRKVLDDNFKEYDMWLAAENGMFLQPSKGEWMTTMPEHLNMEWVDSVKHVLEYFTERTPRSHFDYEERETSLVWNYKYADVEFGKLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTSPIDYVLCIGHFLGKDEDIYSFFEPDLPSIGVSLPRSKVSTTDAVKFPVDRRQSLKTPASKNGAKASQNKALRAVTNSEKKANNHVCSAPRRPAPPEKTSWNVLDLKKENYFSCAVGRHRTNARYTLGSPDDVVGFLMELADASLYSSPPS* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4904 937 MobiDBLite consensus disorder prediction 861 880 - -
Lja3g4904 937 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 31 926 - -
Lja3g4904 937 CDD GT20_TPS 95 560 IPR001830 GO:0003824|GO:0005992
Lja3g4904 937 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 31 926 IPR001830 GO:0003824|GO:0005992
Lja3g4904 937 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 95 560 IPR012766 GO:0003825|GO:0005992
Lja3g4904 937 Gene3D Glycogen Phosphorylase B; 87 341 - -
Lja3g4904 937 MobiDBLite consensus disorder prediction 49 64 - -
Lja3g4904 937 Pfam Trehalose-phosphatase 614 818 IPR003337 GO:0003824|GO:0005992
Lja3g4904 937 MobiDBLite consensus disorder prediction 14 39 - -
Lja3g4904 937 MobiDBLite consensus disorder prediction 1 88 - -
Lja3g4904 937 SUPERFAMILY HAD-like 592 926 IPR036412 -
Lja3g4904 937 CDD HAD_TPP 593 812 - -
Lja3g4904 937 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 94 562 - -
Lja3g4904 937 Gene3D Glycogen Phosphorylase B; 342 544 - -
Lja3g4904 937 Gene3D - 682 764 - -
Lja3g4904 937 Gene3D - 596 778 IPR023214 -
Lja3g4904 937 Pfam Glycosyltransferase family 20 95 560 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4904 Lja-Chr3 91103885 91123119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4904 1 935 Trehalose Biosynthesis Gene Families AT1G78580 76.786 0.0 1458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4904 K16055 - gmx:100797320 1576.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4904 3 91103885 91123119 Lja3g4904 3 91103885 91123119 ECH