Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4900 ATGTCAACTTCATCCTCGAGAGAAGTTATCGTTACTAGCTCCCCTGACGGCCCCATAATCGCCTACAACGCCTCCACCGGTGCTGCTATCGCTCATTTCCCTGGAAGTCGGTCACCGTGTCGCGGCCTTGCCATGGCTAGCCCAGAGCTCATCGCAGTCTCTCACGTTTCCCCAAACACAGGTACAGGCTCAATCCACCTCTACAACTGGTACACCTCAAGCGTGTTTATCAAGCTCGATGTCCCTGAACCGGTTGCCCCACTATATGCCACCTCAGACGGAGCCTTTCTCTTCGCTGGTGGCGTATCAGGGGCAATTCACTCATTGTCACTCCCTTCAGGGGATCTGGTTAAGTCCTTCGTCGCCCACTCAAAATCTGTTTCAAGTCTCACATTAAGTGACGATGAGTCACTCTTGGTATCAGGCGGTGATGATGGGACCATTGTTGTGATCCCAAAATTTAAGCTTCTCACGAAGGGAGATAAAATAGAAGATCAGAGAAACTCGATCTTGTACCGATTGCAGGCTCATTCAGATTCAGTAACTTGGTTGAAATTTGTCATAGGGTGTAACTCTACATTGGTTTCTTCATCACTAGATCACACAGTCAAGTTTTGGAGCCTGGCTCTTAAGATTCAAACCTGCGATGTGGAATTCCCTTGTTCTATTTTGGGGGTTGTTATGGACTCAACAGAGTCAGTGTTCTATGCAGGCGGCCATGATGGGTTGGTTTACAAGGGGTTGATGAAGGTTGAGACTAAAAATACATTGATAAAATCTTATGATTTGGTCCCTTTGTCTAAGACCAAGAGACATAGTGGTTTAATTGTATCTCTGATTTTGGTGAACCATGGGAGGATTTTGGTTTCTGCTGCAGATGATGGGAGTGTCTGGGCATGGAATGTGGAGAGAGGAGACTTCATTACGGCTCTGGGAAATAACATGGGAAAGATAAGTCATATGATCTTGACCATAGGAACTCCTGAGTATCGATTTAGAAAAAAAAATAATGTTGTTGGTAGTGAAAGGAGTAGCTTCACTTCTTCTAGGCTCTGTGAGGAAGAGATGATTAAGACTATGAAGCAAATCACAGAGGATGGAGATTTCATGGATATGATTAAGAAGGACAAGAAGAAAGCCATTGAAATGATGGAATCTACCATTACAACATACAAGAAGTTCTTGAGACTTATTCGTACGGAAGCTCGGGCCCTTGAAGCAATAGAAGAGGAAGCAGAGATAAAGAAGGAAGATATGAAGGAAAATAAGTAA 1272 0.4434 MSTSSSREVIVTSSPDGPIIAYNASTGAAIAHFPGSRSPCRGLAMASPELIAVSHVSPNTGTGSIHLYNWYTSSVFIKLDVPEPVAPLYATSDGAFLFAGGVSGAIHSLSLPSGDLVKSFVAHSKSVSSLTLSDDESLLVSGGDDGTIVVIPKFKLLTKGDKIEDQRNSILYRLQAHSDSVTWLKFVIGCNSTLVSSSLDHTVKFWSLALKIQTCDVEFPCSILGVVMDSTESVFYAGGHDGLVYKGLMKVETKNTLIKSYDLVPLSKTKRHSGLIVSLILVNHGRILVSAADDGSVWAWNVERGDFITALGNNMGKISHMILTIGTPEYRFRKKNNVVGSERSSFTSSRLCEEEMIKTMKQITEDGDFMDMIKKDKKKAIEMMESTITTYKKFLRLIRTEARALEAIEEEAEIKKEDMKENK* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4900 423 Gene3D - 1 214 IPR015943 GO:0005515
Lja3g4900 423 Coils Coil 398 423 - -
Lja3g4900 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 120 150 - -
Lja3g4900 423 PANTHER OS09G0477800 PROTEIN 3 409 - -
Lja3g4900 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 208 IPR001680 GO:0005515
Lja3g4900 423 ProSitePatterns Trp-Asp (WD) repeats signature. 288 302 IPR019775 -
Lja3g4900 423 PANTHER WD-REPEAT PROTEIN 18 3 409 IPR045227 -
Lja3g4900 423 Gene3D - 215 325 IPR015943 GO:0005515
Lja3g4900 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 310 IPR001680 GO:0005515
Lja3g4900 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 174 208 - -
Lja3g4900 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 120 150 IPR001680 GO:0005515
Lja3g4900 423 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 4 306 IPR011047 -
Lja3g4900 423 SMART WD40_4 262 301 IPR001680 GO:0005515
Lja3g4900 423 SMART WD40_4 113 152 IPR001680 GO:0005515
Lja3g4900 423 SMART WD40_4 167 207 IPR001680 GO:0005515
Lja3g4900 423 Pfam WD domain, G-beta repeat 171 207 IPR001680 GO:0005515
Lja3g4900 423 Pfam WD domain, G-beta repeat 115 150 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4900 Lja-Chr3 91033467 91034738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4900 100 315 U-box Gene Family AT2G33340 26.549 1.33e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4900 K14829 - gmx:100785191 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4900 3 91033467 91034738 Lja3g4900 3 91033467 91034738 ECH