Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4899 ATGGCATCACTGTGTGGTGCAGCTTCAGTGACCTTCCCTTCACCTTCATTCCCATCTCACAAGATTTCAACTACAAAATCATCCTTCGTTGGCTTCCAATTGCCACTACCAAAGCTTTCATCTTCTTCCATTCGAACCCATTTCACTGCAACTCTTCGCGTCCATTGTCAGCAGGAAACTTCCTTGGTCACAGAAGAACAATCTCCAGTGGTTGCAGTAGAACAAGATCCTCGCTTCATGTGCGTTGAACCTGAGCCCCGATTCAAAGGCCCGGACATTTGGAACAAGACCTATTATCCAAAAGCTGCTGATCATGTCAATACAGAGAAAACATGGTACGTTGTCGACGCCACAGACAAAGTTCTTGGAAGACTAGCATCAACAATTGCCATTCACATCCGAGGGAAGAACCTAATGACCTATACACCCAGTGTGGACATGGGTGCTTTTGTAATTGTGGTAAATGCAGAAAAGGTTGCTGTGTCAGGGAAAAAGAGGACCCAAAAGCTTTACAGAAGGCACTCTGGACGACCTGGTGGTATGAAAGTGGAGACATTTTCCCAGCTGCAGAACAGAATTCCTGAAAGAATTATTGAACATGCTGTTCGGGGCATGCTTCCAAAAGGGAGGCTTGGCAGGGACCTATTCACCCACCTGAAGGTTTATAAGGGCCCAGATCATCCACACGCAGCGCAGAAGCCTGTTGATTTGCCGATAAGAGATAAGAGAATAGAGTTGAAGAGATAG 747 0.4618 MASLCGAASVTFPSPSFPSHKISTTKSSFVGFQLPLPKLSSSSIRTHFTATLRVHCQQETSLVTEEQSPVVAVEQDPRFMCVEPEPRFKGPDIWNKTYYPKAADHVNTEKTWYVVDATDKVLGRLASTIAIHIRGKNLMTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFSQLQNRIPERIIEHAVRGMLPKGRLGRDLFTHLKVYKGPDHPHAAQKPVDLPIRDKRIELKR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4899 248 PANTHER RIBOSOMAL PROTEIN L13 62 248 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lja3g4899 248 PANTHER 50S RIBOSOMAL PROTEIN L13, CHLOROPLASTIC-LIKE 62 248 - -
Lja3g4899 248 SUPERFAMILY Ribosomal protein L13 106 239 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lja3g4899 248 TIGRFAM rplM_bact: ribosomal protein uL13 106 237 IPR005823 GO:0003735|GO:0005840|GO:0006412
Lja3g4899 248 CDD Ribosomal_L13 112 225 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lja3g4899 248 ProSitePatterns Ribosomal protein L13 signature. 202 224 IPR023563 GO:0003735|GO:0005840|GO:0006412
Lja3g4899 248 Gene3D Ribosomal protein L13 96 244 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lja3g4899 248 Pfam Ribosomal protein L13 110 228 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lja3g4899 248 Hamap 50S ribosomal protein L13 [rplM]. 112 247 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4899 114 238 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 31.061 7.81e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4899 K02871 - gmx:100305981 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4899 3 91026822 91030336 Lja3g4899 3 91026822 91030336 ECH