Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4896 ATGCAACTCTTCATAAATAACACACTTGGGAAGAAGGATTGGGACTTCACCGTGGATCCATGTAGCGGGCAGGGTAACTGGACATCGCCTACTCAACTGCAAGGATCAGAAAATGCTGTGACTTGTAATTGTTCATTTGCCAATCACACTGTTTGCCATGTTGTCAGCATTATTTTGAAGAAGCAGAATCTTTCTGGTACTCTCCCACCGGAGCTTTCCAGGTTGCCTTATCTCCAAGAAATTGACCTCACCTTCAACTACCTTAATGGTACAATCCCTAAAGAATTGGCCACCTTAAATCTTGTCAACATTTCCATTCTTGGAAATCGACTAACGGGTCCAATCCCAAAGGAGCTTGGAAACATCACTACTCTCAAAAGTTTGGTATTGGAGTTCAATCAATTATCAGGAAATCTTCCACCAGAGCTTGGGAATCTTACCCAGATTGAAAGACTGCTTCTTACCTCCAACAATTTCACTGGAGAGTTACCTGCTACATTTGCTAGGCTCACTCGGTTGAAACATGTACGAATTGGGGACAATCAATTCTCTGGAGCGATACCCAATTTTATACAGAACTGGAAAAATCTTGATACACTCGTGATCCAAGGGAGTGGTTTGAGTGGGCCAATTCCTTCTGGAATTTCACTTCTGACAAACCTTACTGACTTGAGAATTACTGACTTGAATGGATCTGATTCATCCTTTCCACAACTAAATAATTTGACAAACTTGGAGACACTAATATTGAGGAGTTGCAACATAATTGGAGCCTTGCCTGATTATCTTGGAAACTTGACCACTCTGCAAGTATTAGACCTCAGCTACAACAAACTAACTGGACCAATTCCGAGCAGTTTTGATCGTCTGCAGAACATGTATATGCTATTCTTAACTGGAAATCTTCTCACTGGATTGCTGCCTCAATGGATAGTTAAACTAGACTTTGTTGATCTCTCATATAACAACTTCAGCATTAGCAACGGGGAGCAGCTGAGTTGTCAACAGGGAAGCGTGAATTTGTTTGCATCCTCTTCAGCCGGAAACACCTTAGGGAATGTTTCTTGTTTGTCCAACATTAAGTGTCCAAAATATGCATATTCTCTCTATATAAATTGTGGTGGAAAGCTTGTAACTTCTGATGGAAATAAGACATATGAAGATGACTCAAGTGAGATTGGATCTGCAAGATATCGTCAAACTGGAGCAAACTGGGCACTTATCAATGCTGGTCACTTCTTCGATAGTGGTCGCGCAGACTACTATACTTGGTCTAACACAAGTAAGCTCGCAGTGGACAATGCTACACTGTACATGGATGCACGGGTTTCTCCCAATTCTTTGACTTATTATGAATTTTGCCTGGGAAATGGAAACTACACGGTGAATCTCCATTTCGCTGAAATAATGTTCACCGATGATAAAACATATAGCAGCCTTGGCAGGCGTGTTTTTGATATCTACATTCAGAGAAAGCTGGTGGCCAAGGATTTCAATATTGCAAAAGAAGCAGGGGGTGTTGGTAAAGCAATCATAAAAAAATTCACTGCTGTTGTGACTAGAAATGCCTTGGAGATCCGCTTATATTGGGCTGGGAAAGGGACAACCTCTATCCCATTTGGATCTGTATATGGTCCTCTTATATCAGCTATATCTATTGATTCTGATTTTGTACCTCCGTCAGAAAATGGAAGTAGCATATCTGTAGGGGTTGTGGTTGCAATTGTGGCTGCTGGAGCAATTATTATCATTTTGGTAATTGGTATACTATGGTGGAAGGGCTGCTTGAGACTGAAAAAGCCAATATCCAGAGAGCTAAAGGGTTTAAAATCACAAACTGGTTTATTTACCCTACAACAAATCAAAGCAGCAACAAACAACTTTGACAAAGCCTTGAAGATTGGAGAAGGGGGATTTGGTCCTGTATATAGGGGCATCCTATCAGATGGCACTATCGTAGCAGTCAAGCAGCTTTCTTCAAAATCAAGGCAAGGGAATCGCGAATTCATAAATGAGATAGGCCTGATTTCTGCTTTGCAACACCCTAATCTAGTTAAGCTCTATGGCTGTTGTATGGAGGAGGAGCAATTGCTGCTTATATATGAATACATGGAAAACAATAGTCTCGCTGATGCTTTATTTGTCACAAATAATGATCCTGAGAAACGCCAATTGAGATTGGATTGGCAAACAAGACATAGGATTTGTGTTGGTATCGCTAAAGGTTTGACGTACCTTCACGAGGAGTCAAGACTGAGGATAGTTCATAGGGACATCAAGGCCACTAATGTGTTACTTGATAAAGATCTCAACCCAAAAATTTCTGATTTTGGCTTGGCCAAGCTTTATGAAGAGGACAAAACCCACATGAGCACCAGAATAGCCGGCACTTATGGGTACATGGCTCCTGAGTATGCAATGCATGGCTATTTGACAGACAAAGTAGATGTATATAGTTTTGGAATTGTTGCACTGGAAATTGTCAGTGGGACTAGCAATACCATCAGGCAGCCTATGGAAGAATGCTTCTCTCTTCTTGATTGGGTGCATCTCTTGAAAAAAAGAGGTAATCTAATGGAGCTTGTAGATAAGAGGTTGGGTGAAGACTTCAACAAAGAGGAGGTAATGGTGATGATTAATGTAGCTCTTTTATGCAGCAATGTCTCTCCATCTCTCAGGCCCAGCATGTCTTCAGTAGTGAGCATGCTGGAAGGCAGAACCATTGTTCAAGAAGTGATGTCAGAAAGAACTGAGGTATTGGAGGATAAGAAATTTGAGATGATGCGCCAGTATTACCAAGAGAGAGTAGAAAATATCACAGTTGAGTCTCAGAGCAAGAGTGCCTCAACAGACAAAACATCTTCTATATATAAATCGAATACGGATTCTTCTTTAGGGGATATCAAAAGTTCGTGA 2916 0.4102 MQLFINNTLGKKDWDFTVDPCSGQGNWTSPTQLQGSENAVTCNCSFANHTVCHVVSIILKKQNLSGTLPPELSRLPYLQEIDLTFNYLNGTIPKELATLNLVNISILGNRLTGPIPKELGNITTLKSLVLEFNQLSGNLPPELGNLTQIERLLLTSNNFTGELPATFARLTRLKHVRIGDNQFSGAIPNFIQNWKNLDTLVIQGSGLSGPIPSGISLLTNLTDLRITDLNGSDSSFPQLNNLTNLETLILRSCNIIGALPDYLGNLTTLQVLDLSYNKLTGPIPSSFDRLQNMYMLFLTGNLLTGLLPQWIVKLDFVDLSYNNFSISNGEQLSCQQGSVNLFASSSAGNTLGNVSCLSNIKCPKYAYSLYINCGGKLVTSDGNKTYEDDSSEIGSARYRQTGANWALINAGHFFDSGRADYYTWSNTSKLAVDNATLYMDARVSPNSLTYYEFCLGNGNYTVNLHFAEIMFTDDKTYSSLGRRVFDIYIQRKLVAKDFNIAKEAGGVGKAIIKKFTAVVTRNALEIRLYWAGKGTTSIPFGSVYGPLISAISIDSDFVPPSENGSSISVGVVVAIVAAGAIIIILVIGILWWKGCLRLKKPISRELKGLKSQTGLFTLQQIKAATNNFDKALKIGEGGFGPVYRGILSDGTIVAVKQLSSKSRQGNREFINEIGLISALQHPNLVKLYGCCMEEEQLLLIYEYMENNSLADALFVTNNDPEKRQLRLDWQTRHRICVGIAKGLTYLHEESRLRIVHRDIKATNVLLDKDLNPKISDFGLAKLYEEDKTHMSTRIAGTYGYMAPEYAMHGYLTDKVDVYSFGIVALEIVSGTSNTIRQPMEECFSLLDWVHLLKKRGNLMELVDKRLGEDFNKEEVMVMINVALLCSNVSPSLRPSMSSVVSMLEGRTIVQEVMSERTEVLEDKKFEMMRQYYQERVENITVESQSKSASTDKTSSIYKSNTDSSLGDIKSS* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4896 971 ProSiteProfiles Protein kinase domain profile. 628 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4896 971 MobiDBLite consensus disorder prediction 941 971 - -
Lja3g4896 971 Gene3D Transferase(Phosphotransferase) domain 1 704 929 - -
Lja3g4896 971 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 45 255 - -
Lja3g4896 971 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 348 939 - -
Lja3g4896 971 Gene3D Ribonuclease Inhibitor 158 230 IPR032675 -
Lja3g4896 971 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 348 939 - -
Lja3g4896 971 CDD STKc_IRAK 634 905 - -
Lja3g4896 971 SMART serkin_6 628 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4896 971 SUPERFAMILY Protein kinase-like (PK-like) 612 919 IPR011009 -
Lja3g4896 971 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 257 325 - -
Lja3g4896 971 Gene3D - 366 556 - -
Lja3g4896 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 754 766 IPR008271 GO:0004672|GO:0006468
Lja3g4896 971 Gene3D Ribonuclease Inhibitor 10 157 IPR032675 -
Lja3g4896 971 Gene3D Ribonuclease Inhibitor 231 362 IPR032675 -
Lja3g4896 971 Pfam Leucine rich repeat 243 303 IPR001611 GO:0005515
Lja3g4896 971 Pfam Protein tyrosine and serine/threonine kinase 633 903 IPR001245 GO:0004672|GO:0006468
Lja3g4896 971 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 257 325 - -
Lja3g4896 971 Gene3D Phosphorylase Kinase; domain 1 595 703 - -
Lja3g4896 971 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 45 255 - -
Lja3g4896 971 Pfam Malectin domain 368 551 IPR021720 -
Lja3g4896 971 SUPERFAMILY L domain-like 48 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4896 Lja-Chr3 91000057 91011070 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4896 8 933 Receptor kinase-like Gene Family AT1G53420 55.496 0.0 994
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g4896 PK_Tyr_Ser-Thr 4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4896 - - ccaj:109799273 1435.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4896 3 91000057 91011070 Lja3g4896 3 91000057 91011070 ECH