Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4895 ATGTGTTTCTTCCCTCTTTTTCATCTCCTTTTGCTCTGCTCTGCATCTTCTGTTCTGGGAGCCACTCTGCAACAAGCTGAAGTGCAAGCTCTGAAAGACATAGGTAATACACTTGGGAAGAAGAATTGGGACTTCACTGTGGATCCATGTAGTGGGAAGAAAAACTGGATATCACCTGCTCAATTACCAGGATCAGAAAATGCAGTCACATGCAATTGCTCTTTCAATAATAACTCTGTTTGCCATGTTGTAAGCATTGTATTAAAAGCACAAAATCTTTCGGGTACTCTCCCACCGGATCTTGTAAGGTTGCCTTATCTTCAAGAAATTGATCTCACCCTCAACTACCTTAATGGTACAATTCCTAAACAGTGGGCCACATTGAATCTTGTAAACATTTCCTTCTATGGAAACCGTCTATCGGGTACAGTTCCAGAGGAGTTTGGAAAGATAACCTCTCTCAAAAGCTTGGTATTGGAATTCAACCAATTATCTGGGAATCTTCCTTCAGAGCTTGGGAATCTTCCCCAGATTGAAACACTTCTCCTTCGCTCCAACAATTTCACTGGAGAGTTACCTGCAACATTTGCTAGGCTCACAACATTGAAGCAATTTCGAATTGCCGACAACCAATTCTCCGGAGTAATACCTAGTTTTATACAAAACTTGATAAATCTTGAGATGCTTGTGATCCAAGGGAGTGGTTTGAGTGGGCCCATTCCTTCTGGAATTTCGCATCTGAAAAATCTCACTGTCTTGACAATTACTGACTTGAATGGATCTGATTCTCCTTTTCCACAACTTGATAAAATGTCAATGCTGTCGAACCTCATATTGAGGAGTTGCAATATTATTGGAGCAGTGCCTGAATATCTTGGAAATTTGACTAATCTGCATGTCATAGACCTCAGCCACAACAAATTAACTGGACAAATCCCAATGAGCTTCGATGGTCTAAAGATCTATTTGCTTGTTTTATCTGGGAATCATATGACTGGATCACTGCCTGAGTGGATATCTAAACCAGACTTTGTAGATCTCTCATTTAACAACTTCACTATCAAAAACTTTGAGCAGCAGACTTGTCAACAAGGAAGCGTAGGAAATATTTCATGTTTGGAAAACTATCACTGTCCTAAAACTTCATACTCTCTCTATATAAATTGTGGTGGAAAGCTCGTAAGTATCAATGGAAATAAGACATATGATGATGATTCAAGTGTGATGGGACGAGCAAGGTTTCGCCAAACTGGAACAAACTGGGCAATTATCACTGCTGGGCACTTCTTCGATAGTGGTCGCCCTGATTACTACACATGGTCCAATACAACAAAGCTTTCTGTGGACAATGCTGAAGCTAAACTTTACATGGATGCACGTGTTTCTCCAAATTCTCTGACTTACTATGGATTTTGCCTTGGAAATGGAAACTACACAGTGAATCTCCATTTCGCTGAAATAATGTTCACTGATGATCAGTCATATAGCAGTCTTGGAAGGCGGGTATTTGACATCTACATTCAGAGCAAGTTGGTGGCGAAGGATTTTAATATTGCAGAAGAAGCAGGAGGTGTTGGTAAAGCAGTCATTAAAAAGTTTACTGCTGATGTGACTAGTAATGCCTTGGAGATCCGATTATATTGGGCTGGGAAAGGAACAACTACTATCCCATTTGGATCCGTATATGGTCCTCTTATATCAGCTATATCTGTTGATCCTGACTTTACACCCCCATCGGAAAATAGTAGAAGCATACCCGTAGGAGCTGTAGTTGCAATTGTGGCTGCAGGAGCAATGGTTATAGCCTTGGTTTTGGGTATACTCTGGTGGAAGGGATGTTTAAAACTGAAAAGTTCAAGGTCAAGAGAGCTAAAAGGTTTAAGTTCACAAACTGGTTCATTTACATTAAGGCAAATCAAAACAGCAACAAATAACTTTGATGAGTCCTTCAAGATTGGAGAAGGAGGTTTTGGTCCTGTTTACAAGGGTGTTCTATCAGATGGCACAATAGTGGCAATAAAGCAGCTTTCTTCTAAATCAACGCAAGGAAATCGGGAATTTATAAATGAGATAGGCTTGATTTCTGCTTTTCAGCACCCTAATCTAGTTAAGCTATACGGCTTCTGTGTTGAAGAGGATCAACTGTTGCTCATATATGAATACATGGAAAACAATAGCCTTGCACGTGCTTTATTTGACCAGGAGAAACATCAATTGAAATTGGATTGGCAAACAAGGAAGAGGATTTGTGTTGGTATTGCTAAAGGTTTAGCTTACCTTCATGGAGAGTCAAGACTTAAGGTCGTTCATAGGGACATCAAGGCCACTAATGTGTTACTGGATAAAGATCTCAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTAATGATGAAGATAAGACCCATATAGACACCAGAATAGCTGGCACTTATGGGTACATGGCTCCTGAGTATGCAATGCATGGTTATTTGACGGACAAAGCTGATGTTTATAGTTTTGGAATCGTTGCATTGGAAATTGTTAGCGGAACCACAAACACCGTTAGCCATCCTCAGGAAGAATGCTTCTCTCTTCTAGATTGGGTGCATCTCTTGAAACAAAAAGGTAATCTAATGGATCTTGTTGATTGGAGGTTGGATGGAGACTTCAACAAAGAGGAGGTAATGGTGATGATCAATGTGGCTCTTCTATGCGCCAGTTTCTCTCCAACGCTCAGGCCCTCTATGTCTACAGTTGTAAGCATGCTTGAAGGAAGAACCATTGTTCAAGAGGTGGTGCCCGACACAAGTGGGGTATCAGATGATAAAAAATTTGAGGCGATGCGACAGTACTACCAACAAAGAGGACCAAATAACAAAACTGAGACTTCGAGCCAGAGTATCCCAACAGATGAATCTTGTGCATTTATGCCTGATACTGATTCTTCTTATTGGGAAGCCAGAAATTAG 2952 0.4055 MCFFPLFHLLLLCSASSVLGATLQQAEVQALKDIGNTLGKKNWDFTVDPCSGKKNWISPAQLPGSENAVTCNCSFNNNSVCHVVSIVLKAQNLSGTLPPDLVRLPYLQEIDLTLNYLNGTIPKQWATLNLVNISFYGNRLSGTVPEEFGKITSLKSLVLEFNQLSGNLPSELGNLPQIETLLLRSNNFTGELPATFARLTTLKQFRIADNQFSGVIPSFIQNLINLEMLVIQGSGLSGPIPSGISHLKNLTVLTITDLNGSDSPFPQLDKMSMLSNLILRSCNIIGAVPEYLGNLTNLHVIDLSHNKLTGQIPMSFDGLKIYLLVLSGNHMTGSLPEWISKPDFVDLSFNNFTIKNFEQQTCQQGSVGNISCLENYHCPKTSYSLYINCGGKLVSINGNKTYDDDSSVMGRARFRQTGTNWAIITAGHFFDSGRPDYYTWSNTTKLSVDNAEAKLYMDARVSPNSLTYYGFCLGNGNYTVNLHFAEIMFTDDQSYSSLGRRVFDIYIQSKLVAKDFNIAEEAGGVGKAVIKKFTADVTSNALEIRLYWAGKGTTTIPFGSVYGPLISAISVDPDFTPPSENSRSIPVGAVVAIVAAGAMVIALVLGILWWKGCLKLKSSRSRELKGLSSQTGSFTLRQIKTATNNFDESFKIGEGGFGPVYKGVLSDGTIVAIKQLSSKSTQGNREFINEIGLISAFQHPNLVKLYGFCVEEDQLLLIYEYMENNSLARALFDQEKHQLKLDWQTRKRICVGIAKGLAYLHGESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLNDEDKTHIDTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGTTNTVSHPQEECFSLLDWVHLLKQKGNLMDLVDWRLDGDFNKEEVMVMINVALLCASFSPTLRPSMSTVVSMLEGRTIVQEVVPDTSGVSDDKKFEAMRQYYQQRGPNNKTETSSQSIPTDESCAFMPDTDSSYWEARN* 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4895 983 CDD STKc_IRAK 652 919 - -
Lja3g4895 983 SUPERFAMILY L domain-like 72 353 - -
Lja3g4895 983 Gene3D Phosphorylase Kinase; domain 1 611 721 - -
Lja3g4895 983 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 365 947 - -
Lja3g4895 983 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 286 340 - -
Lja3g4895 983 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 70 285 - -
Lja3g4895 983 Gene3D Ribonuclease Inhibitor 260 367 IPR032675 -
Lja3g4895 983 Gene3D Ribonuclease Inhibitor 192 259 IPR032675 -
Lja3g4895 983 Gene3D Ribonuclease Inhibitor 27 191 IPR032675 -
Lja3g4895 983 ProSiteProfiles Protein kinase domain profile. 646 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4895 983 Pfam Protein kinase domain 649 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4895 983 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 286 340 - -
Lja3g4895 983 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 70 285 - -
Lja3g4895 983 Gene3D - 380 573 - -
Lja3g4895 983 MobiDBLite consensus disorder prediction 947 971 - -
Lja3g4895 983 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
Lja3g4895 983 SUPERFAMILY Protein kinase-like (PK-like) 629 924 IPR011009 -
Lja3g4895 983 Gene3D Transferase(Phosphotransferase) domain 1 722 930 - -
Lja3g4895 983 SMART serkin_6 646 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4895 983 Pfam Malectin domain 384 569 IPR021720 -
Lja3g4895 983 MobiDBLite consensus disorder prediction 947 983 - -
Lja3g4895 983 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 365 947 - -
Lja3g4895 983 Pfam Leucine rich repeat 274 330 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4895 Lja-Chr3 90991048 90999920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4895 21 967 Receptor kinase-like Gene Family AT1G53420 53.549 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g4895 Pkinase 9.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4895 - - ccaj:109799273 1388.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4895 3 90991048 90999920 Lja3g4895 3 90991048 90999920 ECH