Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4860 ATGGGAGAAACAACACAGCAGGACCAAACAGCAGCAGCAACAACCGCCACAAACACACCGCCAGCCTCTTCGAGGCTGGCAATGAGAGGCTCCGGCGGCGGAGAGATAGTGGAGGTGCAAGGAGGCCACATTGTCCGCGCGACCGGAAGAAAAGACCGCCACAGCAAGGTTTGCACCGCCAAAGGTCCCCGGGACCGCCGCGTTCGCCTCTCGGCACACACCGCCATTCAATTCTACGACGTGCAGGACCGGTTGGGCTACGACCGACCCAGCAAGGCCGTCGACTGGCTCATCAAGAAGGCGAAAACCGCCATCGACGAACTCGCCGAGCTTCCCGCATGGAACCCAACCACCGCGGGAACCTCCTCCTCTCAACCGCCACAAAATCAGCAGCAACAGAACTTCAGCGAAATGCTCCACCGCCACTCGCCGGTGGACGACCCGGTCATCGCCTCCGGTAGCCGCATGGTCACCGGAAGAATCCCAGAACAACAGTTTCATTCACAGCAGCAATTGGGCAATGAAGATGATGAAGGCGGAAACAACCACAACAACACCGCCACGAAATACAAATACACCGCCACTGCTGGTTCTGGTTTTCTTCCAGCGTCGTTGGATAACGACATTGCTGACACTATTAAGTCTTTCTTTCCGGTTGAGACCGCCACTACGTCGTTTCATAGCTACCCGCCACCGCCGGACTTGTTATCGAGGACGGCGAGCGGCGGTGGCAGCAGCCAGCAAGATCTGCGGCTTTCCCTACAGTCCTTTCAGGACCACCACCCCATCATGTTCAACCACCACCACCACCAGGGCCACCACGAGCCGGTTCTCTTCGCCGGAACCCCCGCTCTCAGCTTCGACGGTGGTTCCTCCGGTGGGTGGCCTGAGCAGCAGCAGCAGCAGCAAAACCACCACCACCAGAACCACCAGCAGCAGCAGCAACAGGAGGAGCATGAGCATGGTCGGCTTCATAGGATGGTGGCTTGGAATGTTGAAGCTGCAGAAGCTGCTAACAGTGGCCACGGTGCTGGGTTCATGTTCAGCGCGCCTGCGCCGGCGATAATTCCGGCGTCCGTGTTTAGTCATGGCCATGGCCAGTATTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCTTCCATTCGTGCTTGGATAGACCCTACTTCCATTACTGCGGCGAGCCTCGCCGATCACCACCACTACCATCACTACCTCACCCCGGCGATCCACCAGGCTTCTGTCTCCGGCGCAGCCGGTTTCTCTGCCTCCGGTGCCTTCTCCGGTTTTCGCATACCAGCACGAATTCAGGGTGAAGAGGAGCACGACGGTGTATCTGACAAACCGACCTCTGCTTCCTCTGATTCTCGCCATTGA 1380 0.5833 MGETTQQDQTAAATTATNTPPASSRLAMRGSGGGEIVEVQGGHIVRATGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAELPAWNPTTAGTSSSQPPQNQQQQNFSEMLHRHSPVDDPVIASGSRMVTGRIPEQQFHSQQQLGNEDDEGGNNHNNTATKYKYTATAGSGFLPASLDNDIADTIKSFFPVETATTSFHSYPPPPDLLSRTASGGGSSQQDLRLSLQSFQDHHPIMFNHHHHQGHHEPVLFAGTPALSFDGGSSGGWPEQQQQQQNHHHQNHQQQQQQEEHEHGRLHRMVAWNVEAAEAANSGHGAGFMFSAPAPAIIPASVFSHGHGQYFSQRGPLQSSNTPSIRAWIDPTSITAASLADHHHYHHYLTPAIHQASVSGAAGFSASGAFSGFRIPARIQGEEEHDGVSDKPTSASSDSRH* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4860 459 MobiDBLite consensus disorder prediction 288 323 - -
Lja3g4860 459 MobiDBLite consensus disorder prediction 115 135 - -
Lja3g4860 459 MobiDBLite consensus disorder prediction 1 25 - -
Lja3g4860 459 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 459 IPR005333 GO:0003700
Lja3g4860 459 Pfam TCP family transcription factor 49 186 IPR017887 -
Lja3g4860 459 MobiDBLite consensus disorder prediction 292 310 - -
Lja3g4860 459 MobiDBLite consensus disorder prediction 45 64 - -
Lja3g4860 459 MobiDBLite consensus disorder prediction 224 249 - -
Lja3g4860 459 ProSiteProfiles TCP domain profile. 50 108 IPR017887 -
Lja3g4860 459 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 459 - -
Lja3g4860 459 MobiDBLite consensus disorder prediction 166 187 - -
Lja3g4860 459 MobiDBLite consensus disorder prediction 114 135 - -
Lja3g4860 459 MobiDBLite consensus disorder prediction 1 64 - -
Lja3g4860 459 MobiDBLite consensus disorder prediction 437 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4860 Lja-Chr3 90666637 90669869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4860 21 459 TCP Transcription Factor Family AT1G53230 45.336 1.25e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja3g4860 TCP 8.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4860 - - mtr:MTR_8g463380 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3015 3 56227703 56229095 Lja3g4860 3 90666637 90669869 ECH
Lja3g4860 3 90666637 90669869 Lja3g4860 3 90666637 90669869 ECH