Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4859 ATGGCGAAAACAAGACCAGGCAAAAAGGACGTGGACTCATACACCATCAGAGGAACCAACAAGGTTGTCAAAGCTGGTGACTGTGTTCTGATGCGGCCTTCGGATACTTCAAAGCCACCGTACGTGGCGCGTGTGGAGAAGATCGAGCAGGATAACCGGAGCAACGTGAGGGTGCGGGTGAGGTGGTATTACAGGCCTGAAGAGTCGATTGGAGGTCGCAGGCAGTTTCATGGTGTCAAGGAGCTTTTTCTGTCTGACCATTTGGATGTTCAGAGTGCTCATACCATTGAAGGAAAGTGTATTGTGCACTCTTTCAAGAACTATACTAAGCTTGAGCATGTTGGTGCTGAGGATTACTATTGTAGATTTGATTACAAGGCTGCTACTGGGGCTTTCACTCCTGATCGCGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTGGTACCATCCTGCCTGTGTGGGCATGACTATCGAAGAAGCAAAGAAACTGGAGCATTTTATGTGTTCTGAATGTTCGTCAGATGATGATGTGAAGAAACCCCATGCTACATTTTCTGCATCACCAGGTTCTGATATCAAGGTGGAGCCTAAGCGGCGGAAGAGATGA 651 0.4747 MAKTRPGKKDVDSYTIRGTNKVVKAGDCVLMRPSDTSKPPYVARVEKIEQDNRSNVRVRVRWYYRPEESIGGRRQFHGVKELFLSDHLDVQSAHTIEGKCIVHSFKNYTKLEHVGAEDYYCRFDYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLEHFMCSECSSDDDVKKPHATFSASPGSDIKVEPKRRKR* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4859 216 PANTHER BNAC03G64850D PROTEIN 3 212 IPR045205 GO:0006325|GO:0035064
Lja3g4859 216 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Lja3g4859 216 PANTHER OS08G0421900 PROTEIN 3 212 - -
Lja3g4859 216 SMART PHD_3 140 187 IPR001965 -
Lja3g4859 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 201 IPR013083 -
Lja3g4859 216 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Lja3g4859 216 Pfam PHD-finger 140 188 IPR019787 -
Lja3g4859 216 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
Lja3g4859 216 Gene3D - 2 132 IPR043151 -
Lja3g4859 216 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Lja3g4859 216 Pfam BAH domain 23 135 IPR001025 GO:0003682
Lja3g4859 216 MobiDBLite consensus disorder prediction 188 216 - -
Lja3g4859 216 SMART BAH_4 21 136 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4859 Lja-Chr3 90652288 90658750 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4859 31 132 Core DNA Replication Machinery Family AT4G14700 27.184 2.37e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja3g4859 BAH 4.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4859 K25868 - gmx:100810424 437.573