Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4856 ATGGGTCGTCCACCCAGTAATGGAGGCCCCGCCTTCCGCTTCACTCAGAACGAGGTGGCAGAAATGGAAGCTATTCTTCAGGAGCACAACAATGCAATGCCTGCACGTGATGTTCTTGCAGTTCTTGCAGAGAAGTTCAGTGAATCACCAGATCGGAAAGGCAAGATTACAGTGCAGATGAAGCAAGTTTGGAATTGGTTTCAAAATAAAAGGTATGCGATAAGGGCAAAATCAAGTAAGACTCCTGGAAAGTTAAATATCACACCTATGCCTCGGGATGATTCAGCCCCAGTCAGGAATATGTCTCAACCAATAGCTGCACCAATTCTTACCGGTCCAGGTTCAGTTCCAACAACAGCAAAAGTTACTCCAGAAAATTCAGTTATGGAATTTGAAGCTAAATCTGCAAGGGATGGAGCATGGTATGATGTGGCTAGCTTTCTATCACACAGATATTTGGAGTCCAGTGATCCGGAAGTGCTGGTACGGTTTGCTGGTTTTGGACCTGAAGAAGATGAGTGGGTTAATGTTCGAAGGAATGTTCGGCCCCGCTCTCTACCATGTGAATCATCTGAATGTGTTGCAGTCCTCCCTGGAGATCTTATACTCTGTTTTCAGGAAGGTAAAGAGCAAGCTCTTTACTTTGACGCCCATGTCCTTGATTCTCAAAGACGAAGGCATGATGTAAGAGGCTGTCGTTGTAGATTTTTGGTTCGTTATGATCATGATCAGTCAGAGGAAATTGTGCCGCTTAGGAAGGTTTGTCGCAGGCCTGAAACTGATTACAGACTACAGCAACTTCATGCTGTGAGTGATTCAGCACATGTGGATCAGCAGAAGAGTGGCATGGATGCTGCAAATGTTTACACTATCAGGGTTACTAGTTCTTCTGAAACAGTGCCAAAGCAGCAGGTTACAAACATTCATCAACTCCCAACACCAGTTTTGCAACCAAATGTTTCTCTAGCCCCACAGAGTATGAATGTGGATCCAAAGAAAGCTGAGACAACTGATGTTCAACCTGGAAATTCCACCATTGTCCCAGGCAGTGTCCCATTCCCTAGCATAGTTACTACAACTAGTGCTCCTGAAGTCCCTACTCAAAACATGGCTGAAGGAAAATAA 1125 0.448 MGRPPSNGGPAFRFTQNEVAEMEAILQEHNNAMPARDVLAVLAEKFSESPDRKGKITVQMKQVWNWFQNKRYAIRAKSSKTPGKLNITPMPRDDSAPVRNMSQPIAAPILTGPGSVPTTAKVTPENSVMEFEAKSARDGAWYDVASFLSHRYLESSDPEVLVRFAGFGPEEDEWVNVRRNVRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDSQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQQLHAVSDSAHVDQQKSGMDAANVYTIRVTSSSETVPKQQVTNIHQLPTPVLQPNVSLAPQSMNVDPKKAETTDVQPGNSTIVPGSVPFPSIVTTTSAPEVPTQNMAEGK* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4856 374 Gene3D - 188 260 - -
Lja3g4856 374 SMART HOX_1 7 81 IPR001356 GO:0003677
Lja3g4856 374 CDD homeodomain 13 75 IPR001356 GO:0003677
Lja3g4856 374 Gene3D - 10 84 - -
Lja3g4856 374 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 342 - -
Lja3g4856 374 Pfam SAWADEE domain 129 255 IPR032001 GO:0003682
Lja3g4856 374 Gene3D - 126 187 - -
Lja3g4856 374 SUPERFAMILY Homeodomain-like 4 76 IPR009057 -
Lja3g4856 374 Coils Coil 12 32 - -
Lja3g4856 374 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 342 IPR039276 -
Lja3g4856 374 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Lja3g4856 374 MobiDBLite consensus disorder prediction 332 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4856 Lja-Chr3 90621177 90628083 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lja3g4856 SAWADEE 2e-40 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4856 - - gmx:100783895 569.311