Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4853 ATGCGATTATCATGCGAATCTGGTGGTTCAGTGGAGCAGAGGACGGATGGAGGTCGATCGCCTCGGAAGAAGCGGAAGAGATTGGACGCGATATGCGAGGAGGAGTACAATCGGAACCATCCGGGTGAGGGTGATGATGGTGGTGATGATGGAGGTGTTCGCCGTAGCTCACGGGTTCGGCGTGCCCCGGTGCTTCTAGATGTCTCTCCCTCGCCGTCTCCGACGAAGAAGAAGCCGAGGAGGGTGGGTAAGAATGGAGCGTTGAGGGGTGTGAAGGATGATGGTGAGGGTGAGAGTGGAGAAAGAGTGACTGGGGGTTCTGGCATTGCGGAGGATGGGAGAGGTTGGGGTGCGAGGTTGAGATCGAGGGGTAAAAGTGTAGGGTTTAAGGGGAAGAAGGAGAGGGAGTCTCGGCGTGGGAAAAGGAAGCTGTTTGAGGATGGTGTTGGAAGGAGGGTTGATGAGGAGGTGGAGGTGGAGGGTAGGGAGGTTGGTAAGGAAGAAGGGATGCCCAAAGTAGTTAAGTCAAAGAGGCCAGGGAGGATCAAAGCTACCAAGCGTGACGAGGGACGTAAAGATGAAGAGAATGAGGTTTATGAGAATCTAGATGAGACTAAGAGTCAAGAAGTGGAGCTTACATTGAACAAAGATGAGGAGAATACTTCAGTACTGGAGGAAAGACAGTTGTCTGTTGGGGATCAGATAGAAATATTGAATGGGAAGGCCCCTTCAGCAGTAGCAAATCAAGAGAGTGACATATCTGGCAATGTGGAAACAGGGGAGTGTAATGGCAGCATTGAACTGTCTCCAGTGGAACTTGTAGATAAACAGGCTGATCAATTAGAGACTGCAAATGATGGCAAAAATGCAAGTGAGGTTGTGGAAGATGCAGGAGTTCTGATAGAGAACACAGAAAATGAAGTATCTGGTGATAAAGAGGTTCACATTGATGCAAATACCTTGCAGGATGCAAATATTGTGAGACTGAATGAGTCCAAACAAGATACAAATGACAAGCCTCGCCATCAACGTATTAAAGAGGGTAGGAGGTGTGGTTTGTGTGGTGGAGGGACTGATGGTAAACCTCCCAAAAAATTAGTTCATGATAATGGTGAGAGTGAGAATGAGGCATATAGTGGGTCTTCGGCTTCAGAGGAGCATAATTATGATATATGGGACGGCTTTGGTGACGAACCTGGATGGTTAGGGCGCCTCTTGGGTCCTGTTGATGATCGCAATGGTATTGCTCGTATATGGGTTCATCAGCACTGTGCTGTATGGAGTCCAGAGGTTTATTTTGCTGGCTTGGGATGCTTAAAAAATGTGAGGGCTGCACTTTGTAGAGGAAGAGCATTAAAGTGCACACGTTGTGGGAGGCGAGGAGCTACCATTGGTTGTCGTGTTGATCGTTGTCCAAAAACATATCACTTGCCTTGTGCAAGGGCAAACGCTTGCATCTTTGATCATCGCAAATTTCTTATAGCCTGCACAGATCATCGGCATCTCTTCCAACCTCACGGTAATAAATATTTTGACCGGATAAAGAAATTGAAGGCTAAGAAAATGAAGATGAGGAAGATTTCAAACGATGCCTGGAAAAAGGACATTGAAGCAGAAGAGAGATGGTTAGAAAATTGTGGTGAGGATGAAGAATTTTTGAAACGTGAGAATAAAAGACTTCATCGTGATCTAATGAGAATAGCGCCAGTATACATTGGTGGTTGTTCAGACTCTTCCAGCGATAAATCATTTCAGGGATGGGAATCTGTTGCTGGGCTTAAAGATGTCATCCAGTGTATGAAGGAAGTTGTTATTTTACCTCTACTATATCCTGAGTTCTTTGATAATATAGGGCTCACACCCCCGAGAGGTGTTCTGTTGCATGGATATCCTGGAACTGGGAAAACCTTAGTGGTCCGGGCATTGATAGGTGCATGTGCTTCTGGAGATAAACGGATTGCATATTTTGCACGCAAAGGTGCAGATTGCTTGGGAAAATATGTGGGTGATGCTGAGCGTCAACTAAGACTATTATTTCAGGTTGCTGAAAGATGCCAACCTTCTATAATATTCTTTGATGAGATAGATGGACTGGCACCTGTGCGGACTAGGCAGCAAGATCAGACACATAGTTCTGTTGTGTCAACATTACTTGCTCTGTTAGATGGTTTGAAATCTAGGGGTTCAGTTGTAGTAATTGGTGCAACAAATCGCCCTGACGCTGTTGACCCAGCACTTCGGCGCCCAGGAAGATTTGATCGTGAAATTTATTTTCCATTGCCATCAGTTAAGGACAGAGCTGCTATTCTATCACTACACACAAAGAGATGGCCAAAACCAATTAACGGATCCTTGCTCGAGTGGATTGCAAGAAAAACTCCTGGCTTTGCTGGTGCTGATCTCCAGGCTCTCTGTACTCAAGCGGCAATTAATGCTTTGAAGAGGAATTTCCCTTTGCAAGAAGTGCTATCTGCTGCACAAGAGAAAAATTCTGGCTGTAGGAATCTTCCTCTTCCATCATTTGTGGTGGAGGAGAGGGATTGGTTGGAGGCTTTATCGTGTTCCCCACCACCATGCTCCCAGAGAGAAGCTGGAAATGCTGCTAATGATGTAAAGTGCTCCCCTCTTCCCATCCACCTTGTTCCGTGTTTGTTACGGTCATTATGCACTCTTCTCATATCTCTTTTTCTTGATGAACGTGTATGGTTGCCTCCTCCTATATCTAGAGCTGTAACAATGATTAAGAATGTCATGATTGCTGCATTAGATAAAAAGAAAATGCCTATTGATCACTGGTGGTTGCATGTTGATAAGTTTCTCGAAGAAACAAATATTGCTGCCGAGCTAGAGAGGCAGCTCGCTTGTTCTGGAATTTTGTCTGCGGATGGTGGTTTTGCTGGATCTCTTGATGGTGTAGATGATACTGATGATAACATGATGAAATTTGAACCCTCTATAAAGCACCGCGTTGGCATGCGCAGTGGTTTATCATTTGCATTGCCTAACAAATCAGGATTTCGTGTATTGATTGCTGGAAATCCCAGATCTGGTCAAAGACATCTTGCATCTTGCCTTCTTTACTGCTTTAATGGAAATGTTGGAATTCAGAAGGTTGATATGGCAACTATTTCTCAAGAAGGTCATGGAGATGTAGTACAAGGGATTGCACAAATATTAACGAAATGTGCTTGCATGCAATCATGTGTTGTATTCATGCCAAGAATAGATTTGTGGGCTATAGAGACACAGGTCCAAATTTCTAGAAACACCGATTCCTGCTCAACAAATCGCCGATCTCCTGAGATGGCAAACTCTTGTTCTAAACCAAGCCAAGTTACTGAGAAGGAAAAGATGTTCAATGTAGAGAAAGACAAGTCAGGTGATCTGGCCCAAGACAAAGCCAGTGGAAGGGCTTCATATGCCTGGATGTCATTCATTGAGCAGGTGGAGTCCATTGGTGTGTCGACATCACTGATAATTCTGGCTACCTCAGAAGTTCCTTATACTCAACTTCCATGTAAAGTAAAGAAATTCTTCCAAACGTATCAGTCAAAATACAACCATTCAATTCCTTTGGAGCAGACAATTCCTCAGTTCTCTCTGCATTTTGATGGGAAATTTGATCGGGAGGCGGTGATCCAACATTCTGCAGTAGAGCTGTTGAGAAATTTAGTTGAGCAGCAGATTCAGTTTATTTATCAGAGATCTCATAGTCATACGAGTGGCAAAAGGGGGTACAGAACCTATGATTCAGTTGGAGTTTGTAAAGATGGTGAACTTACAAGAAATAATACTGGATCAGTTAATGAGGATAAATGTCCTGAATCATTTACCAAAGTTCCTGCCCCGCCCAACAGTAGGTCAATGAAGGGAAAGTCAACCCTGTTGTTGGCAATATCTACATTTGGGTATCAAATTCTTCGATACCCACATTTTGCTGAACTTTGTTGGGTCACATCAAAACTCAAAGATGGTCCTTCTGCTGATGTAAGTGGACCCTGGAAGGGCTGGCCTTTTAATTCCTGTATAATTCGTCCTTGTAATTCACAAGACAAGGTCATGGTTTCTTGTATATCTAGTGGCATAAAAAGCAAAGAAAGATCTGGATTAGTCAGAGGCTTGGTTGCTGTTGGTTTATCAGCTTACAAAGGTGCTTACACGTCTGTTAGGGAAGTTTCCCTTCAGGTACGTGATGTTCTTGAGATTTTGGTTGGACAAGTTAATGCAAAAATTCAAGCTGGGAAAGACAGATATCAATATCTTCGCATTTTATCGCAAGTAGCTTATCTGGAAGATATGGTCAATAACTGGGCTTATTCATTGCTAAGTCTAGAGCAGGATTCCCCAGAACTTGTGACAAAGGCTATGCCAGAAAATATTAGGTGCAGCCATCTCACATCTGGGGATCACCAAGCCGAAGGCGTGGATTGTCATTTGGTTGTTCCTATGGGCGATGATGGTTTAGAGAGGCAGGACGGAAGTTGCAAGGGAATTCCTGCTGAAACAACTGGATGTCTTTCCTTGAATGACCGAAATGATGATTTAAGTAGTCTTCCTCATGTCAGTATAAATGCAAGTTCTACAGGATCTCTTCAAAACCATTCCTTTTCAGATAAGCAGTTTAATAGCTCTTGTGCTGTAAACCTACCTGTTGAACAATCTATAAATCAGGAAAATGGGAAACAAACACTAACATCTGAAAATTTTGCAGTGGTGAGTGGAGAATTCAGGTCTGCGAAAGACTTGAATGAATCCATACTCACTCCCTCTGTTTCCCTTTCTGAAAATGGAGAATGTGGGTTGTCAAAAGTCTCGAGTAAATCTACATTCATTCCCTCTATTACCCTTTCTGAAAATGGTCTTATTAGTGCCTGTGAACCAGAGGGGGTTAAGCTTGGTAACTCCAGGACAATCTCTAACCCATCCCTCAGCTTGTCCTCTGCTGAGACTGGTGCTAAATATAGTAATGGTAACTGTGGTAAAGATGATAATGTTATAGACATTAATGTCCCTCCAATCAAGGGAAGTGATCCTGCTGAATCTGGGGTTATTTGTTTGTATCAATGTTGCCCTCAATGTCTATCCAGTCTCTATAATTTGACTCGGAAATTACTTGTTCAAGAATGTGGGTTGAATAATAGCCATTGTACAGTGGAAGATGTCCATGATGCTGTGGCATCATTGTCTGTGGATCTTATTTCCGCAGTTAGAAATTTTTACTTGGCCAAAGATTTCAGTGTTTCATCAGATAAAACCTCAAGTCATGAACGGAATGGAGCATCTCTTGACTGTTCCGACCTGAGAGCTTGTCATCCCAGAGACCCAGGATTGCCAGCTGAATGTATTTCTCACTCAACAAGCCCTCATACAGCTGCAGGCAAAGACATAGCTCCGAACGAGTCACTGAAACTTGATTTTAAATTTATTTTCAGAGATGGTGTACTAATTCATATGGACCCAGACAATGATGTCTTTCTTCACTGTAAATTTGAGACCTTTTGCCTCTGTTCTGCAAGAGAGTTGGTAGTAATGACAAAGCGCCCTTTTGATTGA 5553 0.4335 MRLSCESGGSVEQRTDGGRSPRKKRKRLDAICEEEYNRNHPGEGDDGGDDGGVRRSSRVRRAPVLLDVSPSPSPTKKKPRRVGKNGALRGVKDDGEGESGERVTGGSGIAEDGRGWGARLRSRGKSVGFKGKKERESRRGKRKLFEDGVGRRVDEEVEVEGREVGKEEGMPKVVKSKRPGRIKATKRDEGRKDEENEVYENLDETKSQEVELTLNKDEENTSVLEERQLSVGDQIEILNGKAPSAVANQESDISGNVETGECNGSIELSPVELVDKQADQLETANDGKNASEVVEDAGVLIENTENEVSGDKEVHIDANTLQDANIVRLNESKQDTNDKPRHQRIKEGRRCGLCGGGTDGKPPKKLVHDNGESENEAYSGSSASEEHNYDIWDGFGDEPGWLGRLLGPVDDRNGIARIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRRGATIGCRVDRCPKTYHLPCARANACIFDHRKFLIACTDHRHLFQPHGNKYFDRIKKLKAKKMKMRKISNDAWKKDIEAEERWLENCGEDEEFLKRENKRLHRDLMRIAPVYIGGCSDSSSDKSFQGWESVAGLKDVIQCMKEVVILPLLYPEFFDNIGLTPPRGVLLHGYPGTGKTLVVRALIGACASGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAERCQPSIIFFDEIDGLAPVRTRQQDQTHSSVVSTLLALLDGLKSRGSVVVIGATNRPDAVDPALRRPGRFDREIYFPLPSVKDRAAILSLHTKRWPKPINGSLLEWIARKTPGFAGADLQALCTQAAINALKRNFPLQEVLSAAQEKNSGCRNLPLPSFVVEERDWLEALSCSPPPCSQREAGNAANDVKCSPLPIHLVPCLLRSLCTLLISLFLDERVWLPPPISRAVTMIKNVMIAALDKKKMPIDHWWLHVDKFLEETNIAAELERQLACSGILSADGGFAGSLDGVDDTDDNMMKFEPSIKHRVGMRSGLSFALPNKSGFRVLIAGNPRSGQRHLASCLLYCFNGNVGIQKVDMATISQEGHGDVVQGIAQILTKCACMQSCVVFMPRIDLWAIETQVQISRNTDSCSTNRRSPEMANSCSKPSQVTEKEKMFNVEKDKSGDLAQDKASGRASYAWMSFIEQVESIGVSTSLIILATSEVPYTQLPCKVKKFFQTYQSKYNHSIPLEQTIPQFSLHFDGKFDREAVIQHSAVELLRNLVEQQIQFIYQRSHSHTSGKRGYRTYDSVGVCKDGELTRNNTGSVNEDKCPESFTKVPAPPNSRSMKGKSTLLLAISTFGYQILRYPHFAELCWVTSKLKDGPSADVSGPWKGWPFNSCIIRPCNSQDKVMVSCISSGIKSKERSGLVRGLVAVGLSAYKGAYTSVREVSLQVRDVLEILVGQVNAKIQAGKDRYQYLRILSQVAYLEDMVNNWAYSLLSLEQDSPELVTKAMPENIRCSHLTSGDHQAEGVDCHLVVPMGDDGLERQDGSCKGIPAETTGCLSLNDRNDDLSSLPHVSINASSTGSLQNHSFSDKQFNSSCAVNLPVEQSINQENGKQTLTSENFAVVSGEFRSAKDLNESILTPSVSLSENGECGLSKVSSKSTFIPSITLSENGLISACEPEGVKLGNSRTISNPSLSLSSAETGAKYSNGNCGKDDNVIDINVPPIKGSDPAESGVICLYQCCPQCLSSLYNLTRKLLVQECGLNNSHCTVEDVHDAVASLSVDLISAVRNFYLAKDFSVSSDKTSSHERNGASLDCSDLRACHPRDPGLPAECISHSTSPHTAAGKDIAPNESLKLDFKFIFRDGVLIHMDPDNDVFLHCKFETFCLCSARELVVMTKRPFD* 1851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4853 1850 MobiDBLite consensus disorder prediction 161 175 - -
Lja3g4853 1850 Pfam ATPase family associated with various cellular activities (AAA) 625 760 IPR003959 GO:0005524|GO:0016887
Lja3g4853 1850 Gene3D - 761 853 - -
Lja3g4853 1850 MobiDBLite consensus disorder prediction 333 349 - -
Lja3g4853 1850 MobiDBLite consensus disorder prediction 1 143 - -
Lja3g4853 1850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 587 853 IPR027417 -
Lja3g4853 1850 MobiDBLite consensus disorder prediction 161 205 - -
Lja3g4853 1850 ProSitePatterns AAA-protein family signature. 730 748 IPR003960 GO:0005524|GO:0016887
Lja3g4853 1850 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 50 1846 - -
Lja3g4853 1850 Pfam AAA+ lid domain 786 818 IPR041569 -
Lja3g4853 1850 MobiDBLite consensus disorder prediction 127 143 - -
Lja3g4853 1850 PANTHER AAA DOMAIN-CONTAINING 50 1846 IPR045199 -
Lja3g4853 1850 MobiDBLite consensus disorder prediction 333 383 - -
Lja3g4853 1850 MobiDBLite consensus disorder prediction 182 205 - -
Lja3g4853 1850 Gene3D - 586 863 IPR027417 -
Lja3g4853 1850 ProSiteProfiles Extended PHD (ePHD) domain profile. 390 500 IPR034732 -
Lja3g4853 1850 CDD AAA 619 760 - -
Lja3g4853 1850 MobiDBLite consensus disorder prediction 1266 1286 - -
Lja3g4853 1850 Pfam PHD-like zinc-binding domain 421 500 - -
Lja3g4853 1850 MobiDBLite consensus disorder prediction 16 61 - -
Lja3g4853 1850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 502 IPR013083 -
Lja3g4853 1850 SMART AAA_5 621 762 IPR003593 -
Lja3g4853 1850 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4853 Lja-Chr3 90586181 90594579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4853 617 838 Calmodulin-binding Proteins AT3G56690 39.640 7.04e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4853 - - lja:Lj3g3v0428950.2 3375.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4853 3 90586181 90594579 Lja3g4853 3 90586181 90594579 ECH