Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4849 ATGGACAGTTACCACCACCACCACCAGATTCACCACCAGAGCTTCGATTCCAACAACACTGATGCTAGCCTTCCACCTGGCTTCCGCTTCCACCCCACTGACGAGGAGCTCATCACCTACTACCTCCTCAAGAAGGTTCTCGACAGCAACTTCACTGGAAAAGCCATTGTTGAAGTCGACCTCAACAAGTGTGAACCATGGGAGCTTCCAGGGAAAGCGAAGATGGGTGAGAAGGAGTGGTACTTCTTCAGCCTCCGTGACAGGAAGTACCCAACGGGGTTACGCACCAACCGTGCCACTGAAGCTGGGTACTGGAAAGCCACCGGAAAAGACAGAGAGATTTACAGCTCCAAAACCTGCTCACTCGTTGGCATGAAGAAAACTTTGGTTTTCTACAGAGGAAGAGCACCCAAGGGAGAAAAGAGTAATTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCTTACCACTACCTCTCTAGAAGCTCCAAGGATGAATGGGTGATATCACGTGTTTTTCAGAAGAACACCGTTGGTAGCGGTGGTGCCGCCGTGTCTGGCGCCTCCGGCGGCTCCAAGAAGGGGATGCGAGCTAGCACCGGGGGATCTTCTAGCATGAGCCTCTGCGGCAGCGCCTATGAACCTGGTTCGCCGGCGTCTTCTTCCATTTACCTTCCGCCGCTTATGGAATCTTCTCCATACACTGCCACCAGCTCCGCCGCCACCTCCGCCGCCTTGTTTAAAGACGGTGACTCCTTCGACAGCGTGAAAAGAGAGCACGTGTCCTGTTTCTCCACAATCAACAATGCCGCCGGCAACAACAACAGCTTCTCCGGCGGTGGGTTTGACCTTGCTCCTCTCGCCGTGGACCCTTTCTCCCGGTTCCAGAGGAACGTTGTCGGTGTCTCAGCCTTCCCCAGCCTGAGGTCGTTGCAGGAGAATCTCCAGATGCCATTCTTTTTCTCCCCGCCGGCGGCGCAGCCCATGAATGCTGACGTGGCGGGATGTGGAAACGTCGGGAACTGGCCGGTGATGGAGGAGCATGTGGTGTCTGACGGTGGCTCCGGCATGCCGGTGGGAGCATCGGAGCTTGATTGCATGTGGGGCTATTGA 1116 0.5529 MDSYHHHHQIHHQSFDSNNTDASLPPGFRFHPTDEELITYYLLKKVLDSNFTGKAIVEVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKNTVGSGGAAVSGASGGSKKGMRASTGGSSSMSLCGSAYEPGSPASSSIYLPPLMESSPYTATSSAATSAALFKDGDSFDSVKREHVSCFSTINNAAGNNNSFSGGGFDLAPLAVDPFSRFQRNVVGVSAFPSLRSLQENLQMPFFFSPPAAQPMNADVAGCGNVGNWPVMEEHVVSDGGSGMPVGASELDCMWGY* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4849 371 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 368 - -
Lja3g4849 371 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 17 368 - -
Lja3g4849 371 MobiDBLite consensus disorder prediction 181 203 - -
Lja3g4849 371 Pfam No apical meristem (NAM) protein 25 151 IPR003441 GO:0003677|GO:0006355
Lja3g4849 371 Gene3D NAC domain 33 179 IPR036093 GO:0003677|GO:0006355
Lja3g4849 371 SUPERFAMILY NAC domain 18 176 IPR036093 GO:0003677|GO:0006355
Lja3g4849 371 ProSiteProfiles NAC domain profile. 24 176 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4849 Lja-Chr3 90531117 90533076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4849 10 371 NAC Transcription Factor Family AT5G53950 53.077 3.30e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g4849 NAM 3.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4849 - - gmx:100788671 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4849 3 90531117 90533076 Lja3g4849 3 90531117 90533076 ECH