Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4845 ATGCCTCCAAGAGGGAATCGCACCATTCTCCCTCGACCCAACCTGGCCACAGAGGTCAAGTACAGAGGGGTCAGGAAGAGACCATGGGGTCGTTATGCCGCCGAGATCCGTGATCCAAATCGGAAAATTCGTGTCTGGCTCGGCACATTCGACATTGCAGTGGAAGCAGCGTATGCCTATGACGATGCAGCGCGTGCGTTCCATGGCGATAAGGCCAAGCTCAATTTCCCCATCACGACAGATCTCAATTTTCCCATCCCTACCAACAACAACAACTCTGTCCTGCGCATTCCCAGCCAAGGAAGTACCTTCGAGTTCTCCTCTTCGGCACTGTTGAATCTCACTCTCGCTGTTGTTGATACTACACCGATTGTTTCCTCCGTCGCCATTAATGCTAATGCGGCCCCCGCGAGGGTTTTCAGCGTCGCTGCTGGTCACCCTCTAGCATTCTTTAATGACTTGACTCCTGTTGCCGCCGCCACGAGGCAAGGAAGAGATCAAAGTGAATCTGGGTCGTCATCCACCGTGGAGAATGAACAAGTCCTTGTAGGTCCAAATCAGGTCAATTTTGACCTTAACGCCCCACCCCTACCAGATAATGCCTAA 606 0.5248 MPPRGNRTILPRPNLATEVKYRGVRKRPWGRYAAEIRDPNRKIRVWLGTFDIAVEAAYAYDDAARAFHGDKAKLNFPITTDLNFPIPTNNNNSVLRIPSQGSTFEFSSSALLNLTLAVVDTTPIVSSVAINANAAPARVFSVAAGHPLAFFNDLTPVAAATRQGRDQSESGSSSTVENEQVLVGPNQVNFDLNAPPLPDNA* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4845 201 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Lja3g4845 201 MobiDBLite consensus disorder prediction 161 201 - -
Lja3g4845 201 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 173 - -
Lja3g4845 201 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Lja3g4845 201 Gene3D AP2/ERF domain 19 80 IPR036955 GO:0003700|GO:0006355
Lja3g4845 201 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Lja3g4845 201 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Lja3g4845 201 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Lja3g4845 201 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 173 - -
Lja3g4845 201 MobiDBLite consensus disorder prediction 161 187 - -
Lja3g4845 201 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Lja3g4845 201 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4845 Lja-Chr3 90486692 90487297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4845 14 123 AP2-EREBP Transcription Factor Family AT3G15210 55.856 1.79e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja3g4845 AP2 1.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4845 K09286 - zju:107432572 131.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3774 3 74422847 74424109 Lja3g4845 3 90486692 90487297 ECH
Lja3g1228 3 12919513 12920795 Lja3g4845 3 90486692 90487297 ECH
Lja3g4845 3 90486692 90487297 Lja6g3028 6 59067794 59069988 ECH
Lja3g4845 3 90486692 90487297 Lja3g4845 3 90486692 90487297 ECH