Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4843 ATGGATTTTGTTAGCTGCAGCTCCACATCGATGAGAACCTGTAGATACGATGTGTTCATTAGTTTTAGAGGTCCCGAAACCCGCAATACTTTTGTTGATCATCTTTACAACCACCTCGTCAAGAAAGGCATTTTTGCCTTCAAGGATGACCAAAGGCTTGAGAAAGGAGAACCCATTTCATTGCAGCTTCTACAAGCGATTAAAGATTCAAGGGTTTCCGTCGTCGTCTTCTCAAGAGATTACGCTTCCTCAACATGGTGTTTGGATGAACTGGCTGCTATTGCTGAATGCCATGAAGAATTAAAACAAACTGTTTTCCCTGTTTTTTATGATGTTGATCCATCTCATGTTCGAAAACAGGATGGGGTGTACCATGATGCCTTTGTTTTACACACCCAGAAATTCAAATATGACCCGGACAAGGTTGATCGGTGGAAGAGAGCTATGAGGACTTTGGCTGGATCAGCTGGTTGGGATGTCAGGAATAAGCCGGAGTTTGCAGAGATTGAAAAAATTGTTCAAGCAGTGATAAAAACACTGGGTCATAAATTCTCAACATTTACTAATGGTCTAGTTGGGATACAACCTCACATTGAAGAAATAGAAAATCTTTTAAAATTGAGCTCAGAGGAGGAGGATGTTTTTCGAGTTTTAGGAATTTGGGGGATGGGTGGAATAGGAAAGACAACTCATGCAACCGTCTTGTTTGACAGAATCTCTCATCATTTTGATGCTCGATGTTTCATTGAGGATGTAAACAAAATTTACAGAGATGGTGGTGCTGCTGCGATACATAAACAAATTCTCAGTCAAACTTTAGACGAAAATAATCTGGACAGATACAGTAACTATGAAATATCTGGGATTATAAGAAATAGGCTACACTGCAATATTAAAGTCCTTCTAGTTTTTGATAATGTTGATCAATTAGAGCAAATGCAGGAATCAGCTATAAATCCTAAATTCCTTGGCAAAGGAAGTAGAATAATTATAACCACAAGGGATGAGCATATACTAAGAGTATATGGTGCAGATAAAGTGTATCACGTTCCGCTGTTGAGTAGTTATGATGCTAGTGAACTATTTTGTAGAACAGCCTTCAAAATGGAGAAACAAAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATTATGATGAGTTGATTCCAGAGGTACTAAAATATGCTCAAGGTCTTCCATTAGCAATTAGAGTAGTGGCTTCTTTCTTGTGTGCCAGAGATGCTACCCAATGGAGAGATGCCTTGGATAGATTGCAGAATAATCCAGACAATAAAATTGTGGATGTGCTACAAATAAGTGTTGATGGACTACAACATGAGGAGAAGGAAATATTTCTGCATATTGCCTGTTTCTTTAAAGGGGAAAGGGAGGATTATGTAAAGCGTATTCTATATGCTTGTGGATTACATGCTCACATTGGAATTCAAAGAATCCTTGAGAAATCACTTATAACTATTAGAAACCAGGAAATTCATATGCATGAAATGTTACAAGAACTAGGGAAGAAAATTGTCCGACACCAATTTCCTGCAGATCCAGGATTGTGGACTAGAATATGGCAATTCCGGGATTTCTATCAAGTCTTGAACACAGAAGCGGGAACAAACAATGTTAAAGCCGTAGTTCTTGATCAAAAAGAGAACATCTCCAATTGCAGGGCTGAAGGATTGTCAAATATGAGAAACCTTAATTTGCTCATATTATATGATGGGAAATTTTCAGGAAGCCTTAATTTTCTTCCTAACACCCTGCGATATCTTTTGTGGCATGGATACCCTTTCCCATCTTTGCCATCAAATTTTGAGCCATCTTATCTTGTGGAATTGAATATCCCAGATAGTAGCATTGAACGACTATGGGAAGGCCACAAGGATCTCCCCTATTTGAAAAGAATGGATCTGAGCAACTCTAAATATCTGCTCGAGACACCACAATTTTTTCAGACTCCAAATCTTGAGCGGCTAGATCTTACAGGATGCGCAAAATTATTGCAAGTCCATCCATCAATTGGACTTCTTACAAAACTTGCTTTCTTGAGTTTGCAAAACTGTAGCAGTTTGGTCAGCCTCAGTTTCAGCAATAAATCAAAATTAAGTTCTCTAAAAGTTCTGCGCCTCTCTGGTTGTATGAATCTTGAAAACTCACCAGATTTTACAAGGGCAAAAAATCTTGAGTACCTTGACATGGATCGATGTACAAGTTTACACACGGTTCATGAATCCATTGGTGCTCTTGCAAAGCTTATATTCTTGAGTTTGAGGGATTGCACTAATCTTGTCAGTATGCCCAACAGTCTTAATAACATGACATCTCTTATAACTCTAGAGTTATGCAAGTGTTCAAAATTCATGAATCTGCCGTTGACAGAGACTTCCAATCATTCTTCCTATCTGAAATCTTTGATTTTTCTAGATTTAAGCTTTTGTAATCTACGTGAATTACCAGATGCTCTTGGAGACTTGTGGATTTTAGAAAGATTAAATCTAGAAGGAAACAACTTTGTTTCACTACCTTCTACCATGAAGAAGCTTTACAGTCTATCATACTTAAACATGGGTCATTGTCATGAGCTTCAATATTTGCCTAAGCTCCCATTAATAAGTGCTTCATCAGTGGGGAGATATTTTAAAACAGCATCTGAATCCCGTGATCATAGGTCTGGATTATATATTTTTGACTGCCCTAATGTGTTCGATGATTTGTCCGTAGACAAATCTCTTGCATATTGCAACTACTACACATTTAAATGGCTAAGAAGAATGGTTAAGGAACCTCTTCACTTCAGGTGTGGACTTGACATTGTTATTCCCTCACGGATTCATATTATTCCCGAATGGTTCGATCATCAATTTGATGGGGGTGCAATAATAAGGATAGAGCACTTTGATGTGAGTGAAAGTTGGATTGGATTTGCCTTTTGTGTTGCATTTGAGGTAAACAATGACACTGCAACTTTTGGTTCCCCACATCATTTATTTTCTACGCCACTGCCACATCCATTTTATCTTTCTTTTGAAAATGAACACACGGAAGAACGCTTCGATTTTCCATTAAGTTTGGAACTAGACAAGATTGGTGGCTCAAAACATCTTTGGGTAATCTACATTACTAGGAAGCACTGCCATTTTGCAAAAACAGGAGCTTGTGTCGCATTTAAAGCTTGCCCGGGTTTGATAATAAAGAAGTGGGGATTGCGCATGCTCCAGCAAGATATGAAATATCTTTCATTATTTAGTGCAAATAGTATTGTCATTGATAATGTAGAAGAAAGCAACATCAATTTTGAAGGGCCTAAAATCCAACTTCCCTTTAATTGGTTAGTTTCAGACGAAGATGAAGTTGAGAATAATGAAGCCACGGGGAAAGAAAATTACCTATCTAATTTGGGCCTTTAG 3417 0.3822 MDFVSCSSTSMRTCRYDVFISFRGPETRNTFVDHLYNHLVKKGIFAFKDDQRLEKGEPISLQLLQAIKDSRVSVVVFSRDYASSTWCLDELAAIAECHEELKQTVFPVFYDVDPSHVRKQDGVYHDAFVLHTQKFKYDPDKVDRWKRAMRTLAGSAGWDVRNKPEFAEIEKIVQAVIKTLGHKFSTFTNGLVGIQPHIEEIENLLKLSSEEEDVFRVLGIWGMGGIGKTTHATVLFDRISHHFDARCFIEDVNKIYRDGGAAAIHKQILSQTLDENNLDRYSNYEISGIIRNRLHCNIKVLLVFDNVDQLEQMQESAINPKFLGKGSRIIITTRDEHILRVYGADKVYHVPLLSSYDASELFCRTAFKMEKQSSSSSSSSSSSNYDELIPEVLKYAQGLPLAIRVVASFLCARDATQWRDALDRLQNNPDNKIVDVLQISVDGLQHEEKEIFLHIACFFKGEREDYVKRILYACGLHAHIGIQRILEKSLITIRNQEIHMHEMLQELGKKIVRHQFPADPGLWTRIWQFRDFYQVLNTEAGTNNVKAVVLDQKENISNCRAEGLSNMRNLNLLILYDGKFSGSLNFLPNTLRYLLWHGYPFPSLPSNFEPSYLVELNIPDSSIERLWEGHKDLPYLKRMDLSNSKYLLETPQFFQTPNLERLDLTGCAKLLQVHPSIGLLTKLAFLSLQNCSSLVSLSFSNKSKLSSLKVLRLSGCMNLENSPDFTRAKNLEYLDMDRCTSLHTVHESIGALAKLIFLSLRDCTNLVSMPNSLNNMTSLITLELCKCSKFMNLPLTETSNHSSYLKSLIFLDLSFCNLRELPDALGDLWILERLNLEGNNFVSLPSTMKKLYSLSYLNMGHCHELQYLPKLPLISASSVGRYFKTASESRDHRSGLYIFDCPNVFDDLSVDKSLAYCNYYTFKWLRRMVKEPLHFRCGLDIVIPSRIHIIPEWFDHQFDGGAIIRIEHFDVSESWIGFAFCVAFEVNNDTATFGSPHHLFSTPLPHPFYLSFENEHTEERFDFPLSLELDKIGGSKHLWVIYITRKHCHFAKTGACVAFKACPGLIIKKWGLRMLQQDMKYLSLFSANSIVIDNVEESNINFEGPKIQLPFNWLVSDEDEVENNEATGKENYLSNLGL* 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4843 1138 Gene3D - 353 445 IPR042197 -
Lja3g4843 1138 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 158 IPR035897 -
Lja3g4843 1138 Gene3D - 10 183 IPR035897 -
Lja3g4843 1138 Pfam TIR domain 16 186 IPR000157 GO:0007165
Lja3g4843 1138 Gene3D - 184 346 IPR027417 -
Lja3g4843 1138 Gene3D Ribonuclease Inhibitor 724 880 IPR032675 -
Lja3g4843 1138 Pfam NB-ARC domain 198 430 IPR002182 GO:0043531
Lja3g4843 1138 SUPERFAMILY L domain-like 556 873 - -
Lja3g4843 1138 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 720 IPR044974 GO:0006952
Lja3g4843 1138 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 722 796 IPR044974 GO:0006952
Lja3g4843 1138 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 455 IPR027417 -
Lja3g4843 1138 PRINTS Disease resistance protein signature 294 308 - -
Lja3g4843 1138 PRINTS Disease resistance protein signature 396 410 - -
Lja3g4843 1138 PRINTS Disease resistance protein signature 217 232 - -
Lja3g4843 1138 PRINTS Disease resistance protein signature 703 719 - -
Lja3g4843 1138 ProSiteProfiles TIR domain profile. 14 180 IPR000157 GO:0007165
Lja3g4843 1138 SMART till_3 15 155 IPR000157 GO:0007165
Lja3g4843 1138 Gene3D Ribonuclease Inhibitor 542 723 IPR032675 -
Lja3g4843 1138 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 12 720 - -
Lja3g4843 1138 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 722 796 - -
Lja3g4843 1138 SUPERFAMILY "Winged helix" DNA-binding domain 431 536 IPR036390 -
Lja3g4843 1138 Pfam C-JID domain 950 1076 IPR045344 -
Lja3g4843 1138 Pfam Leucine Rich Repeat 612 629 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4843 Lja-Chr3 90470714 90476087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4843 16 834 WRKY Transcription Factor Family AT4G12020 30.000 7.55e-88 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4843 - - aprc:113855874 1356.66