Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4835 ATGGAGGCCAGGAGTATTGAGAGGAAGAGAACATTGATGATGGAGAAGGTGAGAAAGAACAAGACAGTTGAAGAAGACATGGAAAATGAAGTAGAAGAGGAAGATGAAACTGGTGGTGGTGATGTTATTTTCACAGAAGAAGAGAAGAAGAAAGGGAGAAGAGGATCAAGTGGTGGTGGAGGGGTTTCTCCACCTTCATGCCAAGCTGAGAGATGTGGTGCTGATTTGACTGATGCAAAGAGATACCATCGCCGCCATAAGGTGTGTGAGTTTCATTCCAAGGCACCAGTTGTGGTGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTTCATGACCTGGCGGAGTTTGATGAAGCTAAGAGAAGCTGCCGGAGGCGGTTGGCCGGACACAACGAGCGACGCCGGAAAAGCAACCCGGAAGCCAGCAATGAGGGCAGCAAAGGCCATCTTCACCCTAAGGAAACAACACAGTGCAGGATTGCTGATGAGAGGGGAAGAGTTCAGATGAACCTGCCAGGGAGTTCTGGCTATAAGTCATTTAACATCCGATGA 564 0.4929 MEARSIERKRTLMMEKVRKNKTVEEDMENEVEEEDETGGGDVIFTEEEKKKGRRGSSGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSNPEASNEGSKGHLHPKETTQCRIADERGRVQMNLPGSSGYKSFNIR* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4835 187 Pfam SBP domain 67 140 IPR004333 GO:0003677
Lja3g4835 187 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 159 - -
Lja3g4835 187 SUPERFAMILY SBT domain 65 144 IPR036893 GO:0003677|GO:0005634
Lja3g4835 187 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 159 IPR044817 GO:0003677
Lja3g4835 187 Gene3D - 58 128 IPR036893 GO:0003677|GO:0005634
Lja3g4835 187 MobiDBLite consensus disorder prediction 1 70 - -
Lja3g4835 187 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
Lja3g4835 187 Coils Coil 13 34 - -
Lja3g4835 187 MobiDBLite consensus disorder prediction 27 41 - -
Lja3g4835 187 MobiDBLite consensus disorder prediction 131 187 - -
Lja3g4835 187 MobiDBLite consensus disorder prediction 1 26 - -
Lja3g4835 187 MobiDBLite consensus disorder prediction 137 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4835 Lja-Chr3 90379302 90381019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4835 47 144 SBP-box Gene Family AT2G33810 66.327 8.09e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja3g4835 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4835 - - aprc:113864686 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1290 3 13519987 13521138 Lja3g4835 3 90379302 90381019 ECH
Lja3g4835 3 90379302 90381019 Lja6g3038 6 59184461 59186142 ECH
Lja3g4835 3 90379302 90381019 Lja4g3814 4 70648106 70651269 ECH
Lja3g4835 3 90379302 90381019 Lja3g4835 3 90379302 90381019 ECH