Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4821 ATGGATTCTCCACTGGAACATGTTCTTGTCCTGAATTCCGTCCCCTCACCCTCTCTCTCAGATCGTGTTGCGGCAACAACTGCCCTTTATGTTTTAAATGGCATTGCCAGAGACGACGAAGAGCTTGGGGATATACTGAATTCTGACGCTGTCCCTATTATCATGAGACTTCTTTTTTATTTGAGAGATGAAAATGGTGGTCAAGGCTTCTCTGATACCTTCAAATATGATGTGCAGAGAGGATGTGCTTTGGTCCTCACCCTTCTATCTTTTCAACCGAAGTATCAACAACTCATTGTTGATGCTGGAGCCTTGCCTCATCTTGTTGATTTGTTAAGGGTGCACAAGGCTGGTGTCATGTCTCAAGCACTTATTGGTATTCTTAAGACAACAGCAGGCACAATAACCCATCTTGCCTATCAAAACTCCAACATTAAGACCCTTTTCAGGAATGAAGGTGGTATTCTTCCTCTTGTTGAATTGCTTGAATTCAATGATTCAAAGGTACAAGTGGCAGCTGCAGGGGCCTTGCGAGTTCTTGCATATCAAAATAATGACAACGCAAATCAGATTGTTGAATGCAATGCATTGCCCACTCTTGTACTAATGCTTGGATCAGATGACCCTACTATACATTATGAGGCAGTTGGTTTAATCAGAAATCTGGTCCACTCTTTGCCAAATATTAAGGAAGCTCTTCTTGAAGCTGGTGCTTTACAACCAGTGATTTGGTTGTTGAGTTCCTCATGTTTGAAGAGCCAAAGAGAAGCAACTCTTTTACTTTGTCAGTTTGTTGAATTGGGTCGGGCTACTAAGATTCAGATTGCCGAAAGAGGGGCTGTAAGACCTTTGGTTGACATGCTTACATCCTCAGATGAACAACTTAGTGGAATGTCAGCTTGTGCTCTTGGGAGGTTAGCACAGGACCCTGACAATCAAGCTAGCATTGCTTATAATGAAGGTATAGAGCCTCTACTCAATCTTCTTAACTCAGAGATTTATTTTGTCCAACACAGTGCAGCCTTCGCTCTCTATGGTCTTGCTGTTAATGAGGACAATGTTGCAGATATTATTAAGACTGTACTAAAACACCTGATGAATCTTATGCGCTTTGCAGACAAAGGTGTTCAAAGACTTGTAGCTATTGCCCTTGCTCACTTATGTTTCCCCGATGATCATAAAACTATTTTCATTGTTAATAATGGACTAGAATTGCTTATGGATCTTCTTGAATCTGCAAACCTGAAACAGAAGAGTGATGCTTCAAGAGCACTTTACAAGTTGGCCACCAAAGCCACACCTGTGTACTTAGGCGAACGATATGTGAACAATCCTAATCTTTCTGATGTCACATTCTTAGTTGAAGGTAAAAGGTTTTATGCTCATAGAGGTTCTTTAAAGGCTTCTTCCGATATATTCCGTGCAATATTTGATCAACGTTATAAGGAAAGTGAAGCCCAAGATATAGAGATTCCAAATATTAAATGGGATGTCTTTGAGTTGATGATGAGATTTATTTACACTGGAACAATAGATGTCAATTTGGATATTGCTGAGGACCTCCTCATTGTTGCAGATCAATATCTTCTGGACAATCTTAAGTCTCTTTGTGAACATACTATTTCTCAGGATATTTCAGTGGACAATGTTTCAATATTGTACGAGATGTCGGAGGCTTTTAATGCTACATCATTAAGAAATGTGTGCATATTGTTTTTTCTGGAGCAATTTGATAAGTTGAGTGTCAAACCATGGTATTCTCGCCTAGTTTGTCTTATTGCACCAAGCATACGCAAATTTTTCTCAGCTTTATTTGACAAGTATGATTTAGCTGACTATTGA 1842 0.3969 MDSPLEHVLVLNSVPSPSLSDRVAATTALYVLNGIARDDEELGDILNSDAVPIIMRLLFYLRDENGGQGFSDTFKYDVQRGCALVLTLLSFQPKYQQLIVDAGALPHLVDLLRVHKAGVMSQALIGILKTTAGTITHLAYQNSNIKTLFRNEGGILPLVELLEFNDSKVQVAAAGALRVLAYQNNDNANQIVECNALPTLVLMLGSDDPTIHYEAVGLIRNLVHSLPNIKEALLEAGALQPVIWLLSSSCLKSQREATLLLCQFVELGRATKIQIAERGAVRPLVDMLTSSDEQLSGMSACALGRLAQDPDNQASIAYNEGIEPLLNLLNSEIYFVQHSAAFALYGLAVNEDNVADIIKTVLKHLMNLMRFADKGVQRLVAIALAHLCFPDDHKTIFIVNNGLELLMDLLESANLKQKSDASRALYKLATKATPVYLGERYVNNPNLSDVTFLVEGKRFYAHRGSLKASSDIFRAIFDQRYKESEAQDIEIPNIKWDVFELMMRFIYTGTIDVNLDIAEDLLIVADQYLLDNLKSLCEHTISQDISVDNVSILYEMSEAFNATSLRNVCILFFLEQFDKLSVKPWYSRLVCLIAPSIRKFFSALFDKYDLADY* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4821 613 Pfam BTB/POZ domain 442 543 IPR000210 GO:0005515
Lja3g4821 613 ProSiteProfiles BTB domain profile. 448 515 IPR000210 GO:0005515
Lja3g4821 613 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 361 609 - -
Lja3g4821 613 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 103 153 IPR000225 GO:0005515
Lja3g4821 613 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 360 IPR044282 -
Lja3g4821 613 SUPERFAMILY ARM repeat 129 558 IPR016024 -
Lja3g4821 613 Gene3D - 10 126 IPR011989 -
Lja3g4821 613 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 279 321 IPR000225 GO:0005515
Lja3g4821 613 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 195 237 IPR000225 GO:0005515
Lja3g4821 613 Gene3D Potassium Channel Kv1.1; Chain A 439 582 IPR011333 -
Lja3g4821 613 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 153 187 IPR000225 GO:0005515
Lja3g4821 613 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 361 609 IPR044282 -
Lja3g4821 613 SMART arm_5 390 430 IPR000225 GO:0005515
Lja3g4821 613 SMART arm_5 268 308 IPR000225 GO:0005515
Lja3g4821 613 SMART arm_5 309 349 IPR000225 GO:0005515
Lja3g4821 613 SMART arm_5 184 224 IPR000225 GO:0005515
Lja3g4821 613 SMART arm_5 38 91 IPR000225 GO:0005515
Lja3g4821 613 SMART arm_5 92 140 IPR000225 GO:0005515
Lja3g4821 613 SMART arm_5 350 389 IPR000225 GO:0005515
Lja3g4821 613 SMART arm_5 226 266 IPR000225 GO:0005515
Lja3g4821 613 SMART arm_5 142 182 IPR000225 GO:0005515
Lja3g4821 613 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 4 360 - -
Lja3g4821 613 SMART BTB_4 448 545 IPR000210 GO:0005515
Lja3g4821 613 Pfam Armadillo/beta-catenin-like repeat 184 223 IPR000225 GO:0005515
Lja3g4821 613 Pfam Armadillo/beta-catenin-like repeat 144 181 IPR000225 GO:0005515
Lja3g4821 613 Gene3D - 272 438 IPR011989 -
Lja3g4821 613 Gene3D - 127 271 IPR011989 -
Lja3g4821 613 SUPERFAMILY ARM repeat 27 124 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4821 Lja-Chr3 90255344 90257566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4821 152 432 U-box Gene Family AT5G67340 27.368 1.96e-15 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lja3g4821 BTB 8.7e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4821 - - lja:Lj0g3v0343689.3 798.505