Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4815 ATGGAATCAACATACTTCGATTCTAATGGGGAAGTCTCACCGAAACAAAAATTGAAATCCACTTCAGCAGAGTCACCAATCTCCAGTAGTGACAATGGTTGTTTTGATTGCAATATTTGCTTGGAATCAGCGCATGATCCTGTGGTCACGCTATGCGGTCATCTGTACTGCTGGCCATGCATATACAAATGGCTCAGTGTTCAGAGCTCCTCAGCCGAACCAGACCAGCAGCAAACATGCCCAATTTGTAAAGCTGAGATCTCTCATACTTCATTAGTCCCCCTTTACGGCCGCGGAACATCTAATTCCGAATCTGAATCCAAGAAACTCCAGATGGGTCTTGGAATACCTCAGAGGCCACCTCCTTACAACTTGAATGCTATGTTAACTTCGAACCGGGCATCGAATCCACATCTAGGTGAGCAACTCTATCCAAGTTATTTCCACTCACAATCACAGCCATTACATTATCAGCAGCACTACCTTTACGGAACTCACGGTGCCAATGGATTACCTTATCTTGGCGGTGCTGCTATGACTAGTTTCTTTAACCCTGTGATTGGCATGTTCGGGGAGATGGTCTTGACGAGGATTTTCGGGGTCTCTGATGCAAATTTGTTTCCTTACCCCCATAGTGGAAGTGGCAGTCCCAGAATGAGAAGGCAGGAGATGCAGATTGACAAGTCTCTAAACAGAGTTTCTATCTTTCTTTTGTGTTGTATTATTTTGTGTCTTCTCTTATTCTGA 747 0.4444 MESTYFDSNGEVSPKQKLKSTSAESPISSSDNGCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLSVQSSSAEPDQQQTCPICKAEISHTSLVPLYGRGTSNSESESKKLQMGLGIPQRPPPYNLNAMLTSNRASNPHLGEQLYPSYFHSQSQPLHYQQHYLYGTHGANGLPYLGGAAMTSFFNPVIGMFGEMVLTRIFGVSDANLFPYPHSGSGSPRMRRQEMQIDKSLNRVSIFLLCCIILCLLLF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4815 248 MobiDBLite consensus disorder prediction 1 30 - -
Lja3g4815 248 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
Lja3g4815 248 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Lja3g4815 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 139 IPR013083 -
Lja3g4815 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 4 248 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lja3g4815 248 SMART ring_2 37 83 IPR001841 -
Lja3g4815 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 4 248 - -
Lja3g4815 248 SUPERFAMILY RING/U-box 34 96 - -
Lja3g4815 248 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Lja3g4815 248 CDD RING-HC_AtRMA_like 35 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4815 Lja-Chr3 90219119 90221490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4815 9 234 C3H Transcription Factor Family AT4G27470 46.087 1.13e-58 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4815 K10666 - gmx:100817526 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4815 3 90219119 90221490 Lja3g4815 3 90219119 90221490 ECH