Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4812 ATGGGACCTCTTGTGATTTCTTCTTTTCTTTGTTATGTTTTGTTAGTTTTCAGTGCAGTTAGAATCCAAGCTAACGGTTGGCTTAACGCTCATGCAACGTTCTATGGGGCCAATCAAGCTCCCACCAGCCTTGGGGGAGCTTGTGGTTATGATGATACATTTCATGCTGGATTTGGGATCAACACTGCGGCGGTGAGCACTATGCTTTTCAGACGTGGTGAGGCTTGTGGCGCTTGCTACCAAGTGATATGTGACTCCCGGACTGACCCAAAATGGTGTCTTAGAAGCCGCAGTGTGACGGTAACCGCCACCAACTTCTGCCCTCCAAACAACCACGGAGGGTGGTGTGACCCTCCTCACCACCATTTCGACATGTCCATGCCTGCTTTCTTTCGCATTGCACGACAAGGCAATGAAGGCATTGTTCCTGTTCTTTATAGAAGGGTTCCATGCAAAAGAAGAGGGGGAGTAAGGTTCACATTGAAGGGGCAATCCAATTTCAACATGGTGATGATATCCAACATTGGTGGCAGCGGGGATGTGAAGGCTGTATGGATCAGAAGATCCAGAAGTGGAACATGGTTGCCAATGCACAGGAATTGGGGAGCTAATTGGCAAAGCAACGCAGACCTCAGAAACCAGAGACTCTCATTCAAGGTTACCTTGGTTGATGGGAAGACATTGGTGTTTCTCAATGTGGTACCTTCCACATGGAGGTTTGGACAAACATTTTCATCCCGGAATCAGTTCTTTTAG 756 0.4775 MGPLVISSFLCYVLLVFSAVRIQANGWLNAHATFYGANQAPTSLGGACGYDDTFHAGFGINTAAVSTMLFRRGEACGACYQVICDSRTDPKWCLRSRSVTVTATNFCPPNNHGGWCDPPHHHFDMSMPAFFRIARQGNEGIVPVLYRRVPCKRRGGVRFTLKGQSNFNMVMISNIGGSGDVKAVWIRRSRSGTWLPMHRNWGANWQSNADLRNQRLSFKVTLVDGKTLVFLNVVPSTWRFGQTFSSRNQFF* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4812 251 Pfam Lytic transglycolase 62 146 IPR009009 -
Lja3g4812 251 PANTHER EXPANSIN-A12 8 250 - -
Lja3g4812 251 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Lja3g4812 251 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Lja3g4812 251 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Lja3g4812 251 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Lja3g4812 251 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Lja3g4812 251 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Lja3g4812 251 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Lja3g4812 251 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Lja3g4812 251 Gene3D - 156 251 IPR036749 -
Lja3g4812 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 156 IPR007112 -
Lja3g4812 251 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Lja3g4812 251 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Lja3g4812 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Lja3g4812 251 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Lja3g4812 251 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Lja3g4812 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Lja3g4812 251 PANTHER EXPANSIN-A15 8 250 IPR002963 GO:0009664
Lja3g4812 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 246 IPR007117 -
Lja3g4812 251 SUPERFAMILY PHL pollen allergen 153 246 IPR036749 -
Lja3g4812 251 Pfam Expansin C-terminal domain 157 235 IPR007117 -
Lja3g4812 251 SMART dpbb_1 62 146 IPR007112 -
Lja3g4812 251 SUPERFAMILY Barwin-like endoglucanases 11 174 IPR036908 -
Lja3g4812 251 Gene3D - 16 152 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4812 Lja-Chr3 90176177 90178851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4812 8 251 Expansin Gene Family AT3G15370 60.870 3.35e-118 337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4812 3 90176177 90178851 Lja3g4812 3 90176177 90178851 ECH