Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4797 ATGGACATGTACGGTTCCCTTTCCAACCCTCCAGATCGCCGACGCAATATAGATGATTTTCTAGACTTCTCTCACAACCACCTCCCTCCCCCTCAACACTCTTTCTCCGATCAATTCTCCGGCGACCCCAATTTCTTCTCCAATTTCCCCTCCGTCCCCAGTGATGAAGCAGCAGAGCTGGAATGGCTATCACATTTCGTCGATGATACGACGTCGTTTCACGATCTCCCACCGAGCCACGCCATTCCCATGGGATCTCAAACGACGTCGTTTCTCAGCAACAACAACGATGAAGGTGAGAAGAGCAATAGTTGTTACCGCAATTCCTCAGATGTGATTGCATCGGTGACCGGAAAGTCGAGATCGAAGAGGGCGGCGGCGGTTGAAGGGTCACCGGCGGGGGAGGGAGGAGTACGGAGGTGCAGCCACTGCGCATCGGAGAAGACGCCGCAATGGCGAACAGGACCGCTGGGGCCGAAGACACTCTGCAACGCGTGCGGTGTGAGGTTCAAGTCGGGTCGGCTCGTGCCGGAATACCGACCCGCCGCGAGCCCCACGTTCGTGCTGTCTCAGCACTCGAACTCTCACCGCAAAGTCATGGAACTCCGTCGTCAGAAGGAGCTGATCCGCCACCAACAACAGCCGCAGCAGCAGCAGCAGCAGCAGCAAGATCAGTGCTATCTTCACAAGCAAGATTTCAAAGTGTGCTGA 711 0.5598 MDMYGSLSNPPDRRRNIDDFLDFSHNHLPPPQHSFSDQFSGDPNFFSNFPSVPSDEAAELEWLSHFVDDTTSFHDLPPSHAIPMGSQTTSFLSNNNDEGEKSNSCYRNSSDVIASVTGKSRSKRAAAVEGSPAGEGGVRRCSHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLSQHSNSHRKVMELRRQKELIRHQQQPQQQQQQQQDQCYLHKQDFKVC* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4797 236 PANTHER GATA TRANSCRIPTION FACTOR 14 219 - -
Lja3g4797 236 CDD ZnF_GATA 140 187 IPR000679 GO:0006355|GO:0043565
Lja3g4797 236 Gene3D - 138 227 IPR013088 GO:0006355|GO:0008270
Lja3g4797 236 SMART GATA_3 135 185 IPR000679 GO:0006355|GO:0043565
Lja3g4797 236 ProSiteProfiles GATA-type zinc finger domain profile. 139 171 IPR000679 GO:0006355|GO:0043565
Lja3g4797 236 Pfam GATA zinc finger 141 174 IPR000679 GO:0006355|GO:0043565
Lja3g4797 236 ProSitePatterns GATA-type zinc finger domain. 141 166 IPR000679 GO:0006355|GO:0043565
Lja3g4797 236 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 139 199 - -
Lja3g4797 236 PANTHER GATA TRANSCRIPTION FACTOR 2 14 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4797 Lja-Chr3 90056648 90057883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4797 23 219 C2C2-Gata Transcription Factor Family AT2G45050 49.776 1.72e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja3g4797 GATA 8.3e-16 CL0167