Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4790 ATGGAGGATCAAAGGAAGGTAATTGAGGAGCTTGTGAGAGGGCGTGAGTTTGCAAACCAGCTTAGAAAAGTCATTAGAGGAGGTGATGAGTGTGCAAGTGCAACCCCATTTGCTCAACATCTTGCAAAGAATGTCCTCACCTCCTTTTCCAACACACTCTTGTTCTTGCATAAATACCCCACTACTAATTATAGATCTCAGGATCTGGTTTCTGATCAGATGCAGCATGTTAGGGACACTTCCTTTTTCGCGAGTCCCGCTAAATCTGAGGACTCTCAAGACAGTTGCAAGAGCTCCATCTCAAAGGACAGAAGAGGGTGCTACAAGAGAAGAAAAATTGCCCAAACATGGGAGAAGGTGTCACAAACTCCAACAAGTGATGGATATCAATGGAGAAAGTATGGCCAAAAAGAGATCCTAAATTCCAAATACTCAAGGAACTACTACAGGTGCACTCACAAGTTTGATCAGAAATGCCAAGCAACCAAACAAGTTCAGAGAATTCAAGAGGCTCCCTTATATAGGACAACTTACTATGGCCACCATAATTGCAAAAACATGCTAATACACCCTGAAATCATACTTGATCCCAGTTCTCCTTCTGAAACTTCAATTTTTCTTAGCTTTAACAACACCTTCCCAACTCCAGCTAAACAAGATTGCCCTTTTTTATCCTCATCTTTTCTCTCACCATCGGTCCGCAATGAGTGTAAGGAGGAAGTTCCATCACTTTCCTTAGAAGATTACATACTATCATCCCCTGAGCCTACTATAGATAATTCTTCAAGGCATCTCGCAACAGCATCGTCGATCCTTGAATCTTCCAATCACAGAGATGTGATGTCTAGTGTGATCTTTATTGATTCTGTTGAGCTTGATATGGATGATTTCTTTCTGCCTTTTGTTTGA 909 0.4147 MEDQRKVIEELVRGREFANQLRKVIRGGDECASATPFAQHLAKNVLTSFSNTLLFLHKYPTTNYRSQDLVSDQMQHVRDTSFFASPAKSEDSQDSCKSSISKDRRGCYKRRKIAQTWEKVSQTPTSDGYQWRKYGQKEILNSKYSRNYYRCTHKFDQKCQATKQVQRIQEAPLYRTTYYGHHNCKNMLIHPEIILDPSSPSETSIFLSFNNTFPTPAKQDCPFLSSSFLSPSVRNECKEEVPSLSLEDYILSSPEPTIDNSSRHLATASSILESSNHRDVMSSVIFIDSVELDMDDFFLPFV* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4790 302 Pfam WRKY DNA -binding domain 127 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g4790 302 SUPERFAMILY WRKY DNA-binding domain 120 185 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g4790 302 SMART WRKY_cls 125 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g4790 302 ProSiteProfiles WRKY domain profile. 120 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g4790 302 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 276 IPR044810 GO:0003700
Lja3g4790 302 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 276 - -
Lja3g4790 302 Gene3D WRKY domain 100 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4790 Lja-Chr3 89909759 89912122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4790 6 196 WRKY Transcription Factor Family AT3G56400 35.961 1.82e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja3g4790 WRKY 6.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4790 - - lja:Lj3g3v0459900.1 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3248 1 40075190 40079421 Lja3g4790 3 89909759 89912122 PCT