Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4789 ATGGCTTCTCTGCTCCCTCCAACAGCAACCACCACCACACTTCAACACCATCATCATCAAATGGCAATCTGTTTCTCTCCCATGAAACCCTTCACTCCAAACAACGTTTCTCTCTTAACAAACCGTTTCAAGAACAACTCTACAAAATGCAATGCATTTTTAGACAACGTTGCCAAAGATTTGTTGGAGAACACTGTTGGTTTTGACAAGTTTCCTGGTCTGCAATCAGGACTAGTGCAGTTTCAGAGAGTGAGTGAAGACTTGTCAGACACTCAGAGATGGGGGTTTCTTGTGGTTTATGGGCTGACATGGATTTACTTGACTGCAAGGCCTGGTGTTCTTGTTGGTGCCATTGATGCATACCTTCTGGCTCCTCTGCAACTGGGTTTGGATAGTTTATCTGGAAGGAGAAGCTTGAAGAGGAGTGATTTTTTGGTTGGAGATAAGCTTGGTGAAGGGTCATTTGGAGTTGTTTATTCTGGTGTTTTGATGCCAAAGAATGTGGATGTAGAAGAGAAGGTGCTGAAGAGGGGAAGAGGCAAGGAAACACAGTTGAATGTGAAATCTAAGGATAAAGTCATTCTTAAAAAGGTTAAGGTTGGAATCCAAGGGGCTGAAGAATTTGGTGATTATGAGGAGTGGTTCAATTACAGGCTATCTAGAGCAGCACCTGAAACATGTGCTGAGTTCCTTGGAAGTTTTGTTGCTGATAAAACAAACTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGATCTTACTCTTGGTGATTACATGAAAGATCGCAAGTTTCCTTCAAACATAGAAACTGTCATGTTTGGACGTGTGTTGCAAGGTGTAGACTCTTCAAAACGAAATGGATTGATCATCAAGCAAATAATGCGCCAGATTATTACTTCACTCAAGAAAATTCATAATACAGGCATCGTTCACAGGGATGTAAAGCCAGCCAACATAGTGGTTACCAAACGGGGTCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTGCGGATTGGAAAGAATTATGTTCCCAACCGCATGCTTTTGGATCCCGACTATTGTCCCCCAGAATTGTATGTACTCCCAGAAGAAACACCAAGTCCTCCTCCAGAGCCTGTTGCTGCTTTCCTTTCACCAATCCTCTGGCAGTTAAACAGCCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTACTCCTGCAAATCGCAATACCTTCCTTAAGGTCTCCTGCTGCTTTGAAGAATTTCAATTTGGAAATAAAAACCTGTGGATACGATTTGAAAAAGTGGAGGGACTATACTCGCTTGAGACCTGACTTTAAAATTCTCGATGATGAATCTGGTAGAGGGTGGGACCTTGCAACAAAGCTTATCTCTGAGAGAGGTTCCTTAAGAAGAGGACGTTTATCTGCTGCTGCTGCTTTGAGACATCCTTATTTTCTTCTGGGTGGTGATCAGGCAGCTGCAGTCCTCTCAAAGTTAAGCCTAAGCAGAAGATGA 1521 0.4274 MASLLPPTATTTTLQHHHHQMAICFSPMKPFTPNNVSLLTNRFKNNSTKCNAFLDNVAKDLLENTVGFDKFPGLQSGLVQFQRVSEDLSDTQRWGFLVVYGLTWIYLTARPGVLVGAIDAYLLAPLQLGLDSLSGRRSLKRSDFLVGDKLGEGSFGVVYSGVLMPKNVDVEEKVLKRGRGKETQLNVKSKDKVILKKVKVGIQGAEEFGDYEEWFNYRLSRAAPETCAEFLGSFVADKTNSQFTKGGKWLVWKFEGDLTLGDYMKDRKFPSNIETVMFGRVLQGVDSSKRNGLIIKQIMRQIITSLKKIHNTGIVHRDVKPANIVVTKRGQIKLIDFGAATDLRIGKNYVPNRMLLDPDYCPPELYVLPEETPSPPPEPVAAFLSPILWQLNSPDLFDMYSAGIVLLQIAIPSLRSPAALKNFNLEIKTCGYDLKKWRDYTRLRPDFKILDDESGRGWDLATKLISERGSLRRGRLSAAAALRHPYFLLGGDQAAAVLSKLSLSRR* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4789 506 Gene3D Transferase(Phosphotransferase) domain 1 286 489 - -
Lja3g4789 506 SUPERFAMILY Protein kinase-like (PK-like) 141 488 IPR011009 -
Lja3g4789 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Lja3g4789 506 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 504 IPR044803 GO:0004674|GO:0009579
Lja3g4789 506 SMART serkin_6 144 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4789 506 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 1 504 - -
Lja3g4789 506 Gene3D Phosphorylase Kinase; domain 1 129 254 - -
Lja3g4789 506 Pfam Protein kinase domain 294 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4789 506 ProSiteProfiles Protein kinase domain profile. 144 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4789 Lja-Chr3 89900462 89903801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4789 144 343 MAP Kinase Kinase Kinase AT3G13530 24.631 3.12e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Lja3g4789 Pkinase 1.8e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4789 - - gmx:100795624 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4789 3 89900462 89903801 Lja1g3241 1 40010969 40013825 PCT