Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4772 ATGACTCGTGAAGCGACCATGAAGAAGAAGAAGAACAACGCTAAGAAATCATGTGGATTCGAAACAATGAATCTGTGTCCCAACGTGTTCAGAGGAATCAAGCGCAAAGGCTACCAAGTTCCAACTCCAATTCAGCGGAAAACCATGCCCCTCATCCTCTCCGGCGCCGACGTTGTTGCCATGGCTCGTACTGGTTCCGGCAAAACGGCGGCGTTTCTGCTTCCTATGCTTCACCGGCTCAACCAGCATCTTCCTCAGGGTGGTGTTAGAGGACTCATTTTGTCGCCTACTAGGGATTTGGCGCTTCAAACTCTCAAGTTTACTCAGGAGCTTGGACGGTTCACTGACCTTCGTGTAAGTTTGTTAGTTGGAGGTGATAGTATGGAAGCTCAGTTTGAGGAGTTAGCTCAGAGTCCGGATATTATAATTGCCACTCCTGGTAGGCTTATGCACCATTTGTCTGAGGTGGATGATATGAGCTTGCGTACCGTGGAGTATGTTGTTTTTGACGAGGCTGATTGTTTATTTGGAATGGGTTTTGCGGAGCAGTTGCACAAGATTCTTGCTCAGCTTGGTGAGAACCGTCAGACCTTGCTTTTCAGTGCTACATTACCCAGTGCACTTGCTGAATTTGCCAAGGCTGGTTTGCGAGACCCTCAGCTTGTCAGGCTGGACTTGGAGACTAGAATTAGCCCTGACTTGAAGCTTGCCTTCTTCACTTTGAGGCAGGAAGAGAAGAATGCTGTGTTGCTCTATTTGATCAGGGAGCATATTCGTTCTGATGAGCAGACATTGATTTTTGTGTCCACGAAACACCATGTGGAGTTTCTCAACATGTTGTTCCGGGCAGAGGGTATTGAGCCCTCTGTATGTTATGGCGACATGGATCAAGATGCTCGCAAAATCCATGTATCAAGGTTTAGGTCAAGAAAGACAATGTTGTTGATTGTGACAGATATTGCAGCTCGAGGCATTGATATTCCACTCCTTGATAATGTTATCAATTGGGACTTTCCTCCAAAGCCTAAAATATTTGTCCATCGAGTTGGAAGGGCTGCAAGGGCTGGTCGTACTGGTACAGCGTATTCTTTTGTGACTACAGAGGATATGGCCTACCTTTTGGATCTTCATTTGTTCCTCTCAAAACCAGTCAAAGCTGCTCCCACCGAAGAAGAGTTCTTTCAGGATATGGATGGAGTAAGGTCAAGAAATGATCAGGCACTGGCTAATGGAGTAACCATTTATGGTCGTTTGCCCCAAAAGATCATTGACCTTGTTTCAGACAGAGTTAGGGAAGTGATTGATAATTCTGCAGAACTGGAACTACTGCAGAGAACCTGTAAAAATGCATTTCGTTTATATACAAAGACAAAACCCTTACCCTCGAAGGAGTCCATTAGAAGAGTGAAGGATTTGCCCTGTGAGGGATTGCATCCAATTTTCTATAATGTGTTGGAAACAGGGGAGTTAATGGCTCTTGCATTTTCTGAGAATTTGAAAAAGTTTAGGGGAAAGCAAACCATTTTGGAAACTGAAGGGGAAGCAGCTAAATCAAAGCATCGAAAGGGGCCTTCTGGCCAATGGGTTGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTTCGTGAACAGAATTCTAAGAAAAATATGGAGAAGGAGGAGGAGGAAGTTGAATCAGAAATCACTCCTTTGGGGAAAGGAAGAAAAGCAACAAGTGGTCTTAAGAGAAAGGCCGAAAGTTTCAAGGATGATGAAAACTATATAAGTTCAATACCTAAAAATCAACACATGGAGGCAGGCCTTTCGGTAAAAGCTAATGAAGACTTTGGTTCAAATAGATTGGAAGCAGCTGTCCTAGATCTGGTTGCAGATGATGGTTCTGGCATTCAGAAACAAAGATCTCAATATCACTGGGATAAGAGGGGTAAAAAGTACATCAAGTTAAACAATAATGACCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACGAATGCCACCAAGACTGGTATATATAAAAAGTGGAAAGAACGCTCACACAATAAGGTATCTCTTAGAGGGACCAATACTGATGGTGAAGCTCATGGGTCCTCAAGTTTCTCAGGATCTTTCCGGGGAGGTCGCAGAAATCTTAGAGGCGACGGCAAGAGGCCGCATTCTATGCCTAATGCTAATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGAACAAGGCTAGCAGAATTGCTCATATGAAGACCAAATCACCCAAGGGTAGGGGTAAGGGTAAGGGTAAGGGGGGTAAGGGTATGGGGGGTAAGGGTAAGGGTATGGGGGGTAAGGGTAAAAACCCTGGCAGAAATGGAAAGAGAAAAGCCAAATAG 2406 0.4414 MTREATMKKKKNNAKKSCGFETMNLCPNVFRGIKRKGYQVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLLPMLHRLNQHLPQGGVRGLILSPTRDLALQTLKFTQELGRFTDLRVSLLVGGDSMEAQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHKILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETRISPDLKLAFFTLRQEEKNAVLLYLIREHIRSDEQTLIFVSTKHHVEFLNMLFRAEGIEPSVCYGDMDQDARKIHVSRFRSRKTMLLIVTDIAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTTEDMAYLLDLHLFLSKPVKAAPTEEEFFQDMDGVRSRNDQALANGVTIYGRLPQKIIDLVSDRVREVIDNSAELELLQRTCKNAFRLYTKTKPLPSKESIRRVKDLPCEGLHPIFYNVLETGELMALAFSENLKKFRGKQTILETEGEAAKSKHRKGPSGQWVDVMKRKRAIHENIINLVREQNSKKNMEKEEEEVESEITPLGKGRKATSGLKRKAESFKDDENYISSIPKNQHMEAGLSVKANEDFGSNRLEAAVLDLVADDGSGIQKQRSQYHWDKRGKKYIKLNNNDRVAANGKIKTESGAKTNATKTGIYKKWKERSHNKVSLRGTNTDGEAHGSSSFSGSFRGGRRNLRGDGKRPHSMPNANVRSEIKDMDQIRKERQNKASRIAHMKTKSPKGRGKGKGKGGKGMGGKGKGMGGKGKNPGRNGKRKAK* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4772 801 MobiDBLite consensus disorder prediction 694 714 - -
Lja3g4772 801 Coils Coil 543 565 - -
Lja3g4772 801 MobiDBLite consensus disorder prediction 552 568 - -
Lja3g4772 801 MobiDBLite consensus disorder prediction 739 755 - -
Lja3g4772 801 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Lja3g4772 801 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 6 790 - -
Lja3g4772 801 CDD SF2_C_DEAD 241 365 - -
Lja3g4772 801 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 233 395 IPR001650 -
Lja3g4772 801 CDD DEADc_DDX54 19 223 - -
Lja3g4772 801 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Lja3g4772 801 MobiDBLite consensus disorder prediction 686 801 - -
Lja3g4772 801 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 790 - -
Lja3g4772 801 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Lja3g4772 801 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Lja3g4772 801 Pfam DBP10CT (NUC160) domain 625 686 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Lja3g4772 801 MobiDBLite consensus disorder prediction 552 582 - -
Lja3g4772 801 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Lja3g4772 801 Gene3D - 2 223 IPR027417 -
Lja3g4772 801 Gene3D - 224 393 IPR027417 -
Lja3g4772 801 SMART helicmild6 275 356 IPR001650 -
Lja3g4772 801 SMART DBP10CT_2 625 687 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Lja3g4772 801 MobiDBLite consensus disorder prediction 756 776 - -
Lja3g4772 801 SMART ultradead3 37 244 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4772 Lja-Chr3 89788695 89797068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4772 12 389 Eukaryotic Initiation Factors Gene Family AT1G72730 32.808 8.84e-59 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4772 K14808 - gmx:100806274 1246.49