Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4747 ATGTCTGAATCATACTCAGACTCAGATTCCAGTTGTTGCTCAACTAGATCTGATGCTGCTGCTTCAGCTGAACTGAAGCTGTACCGAGCCTTCATCTTCTCCGTTCCAATCTTCTTCACTCTCATTCTCCTCTTCCTCTTCTACGTCTTCTACCTTCGTCCTCGAAGGGTGGATTGGGCTTCTCTCAGAATGAGATCATCACTCTCCGTTTCACAGGATGACAATGACAATGGCAATGACATCTCCACTTCTGGTGCTTGTTTGGGGTTGAAGAAAGAATTTAGAGAAATGCTGCCTATTATTGTGTACAGGGAAAGCTTCTCCGTCAATGACACACAATGCTCAGTGTGCCTTTTGGACTACCAAGCAGAAGATAGACTTCAACAGATACCGGCATGTGGCCATACCTTTCACATGAGCTGCATTGATCTTTGGCTTTCCAGCCACAGTACCTGCCCTCTCTGCCGCTTGTCCCTACTAACTACTGCTAAATCTTCAACACAGACAATATCCAATGTGCAGAGCAATGAAGAAACACAGGGATCACAGAGCAATGAAGAAACACAGAGATTACAGAGCAATGAAGAAACACAAACTGTGGAATACTCTGACCCTAGGCATCTAGAAACCACTGTTCTCCAGAATGCCTCTGGACAAATAGAAATTGGCGCTCACTGCATTGATGTTGAAGGGCAAAATGCACAACACAATCAATTGGAGCATGAATATATATGA 735 0.4435 MSESYSDSDSSCCSTRSDAAASAELKLYRAFIFSVPIFFTLILLFLFYVFYLRPRRVDWASLRMRSSLSVSQDDNDNGNDISTSGACLGLKKEFREMLPIIVYRESFSVNDTQCSVCLLDYQAEDRLQQIPACGHTFHMSCIDLWLSSHSTCPLCRLSLLTTAKSSTQTISNVQSNEETQGSQSNEETQRLQSNEETQTVEYSDPRHLETTVLQNASGQIEIGAHCIDVEGQNAQHNQLEHEYI* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4747 244 SUPERFAMILY RING/U-box 98 161 - -
Lja3g4747 244 CDD RING-H2_EL5_like 113 156 - -
Lja3g4747 244 Pfam Ring finger domain 113 156 IPR001841 -
Lja3g4747 244 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 2 195 - -
Lja3g4747 244 SMART ring_2 114 155 IPR001841 -
Lja3g4747 244 MobiDBLite consensus disorder prediction 170 206 - -
Lja3g4747 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 162 IPR013083 -
Lja3g4747 244 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lja3g4747 244 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4747 Lja-Chr3 89549240 89552694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4747 17 204 C3H Transcription Factor Family AT4G10150 50.000 2.36e-62 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4747 K19039 - gmx:100794211 258.07