LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g4734	ATGGAGCCTTTGGACCCAACTTACACTTCAGGTGTTGAATTGGGTTCTTCTACAGAATCTGCCCATGTTCATATAGAGGACCATTTTAGACACCTGGAAGCAGTAACTTCCAGAGCTAGGCAGCGCCTGAGGTTGACGCCGGTTCACTCTCCGATTCAGATAACAAACTTTTCAGGAGAAGCCACCACAATAGCTGATGTTCCTGGCGAAGCGAGGGAGCGCAGGGAGGTTGAGGAAAAAGTTGTTGAAAGTGGGAGAGGGGTGAAAAGGAGTGGTGCGGATTTAATAGCGAAAGCTTTGGGGCTGGAAGAACCAGGTGCGAGTAAGGGAGGGAGCAGCACTGGAAACTTTTTTGATTGTAATATATGCTTGGAAATGGCTAGAGATCCTGTTTTGACATGCTGTGGTCACTTGTTTTGTTGGCCTTGCTTCTATAAGTTGTCTTATGCTTACTCAAATGCAAGGGAATGCCCTGTTTGTAATGGAGAGGTTACTGAAGCAGATCTTGTTCCTATTTATGGAAAATCAAGTTCCAGTGGCGATCATCGGTTGGAATTGGAAGAAGCTGGTTTGAGCATTCCTCCTCGACCCATGGCACAAAGAGTTGATGGTATTAGGCAGCAGCTGGTAAGGCAAGGAGCATCTTCCTCTATAGTCCGTCACATCTTGCAGTTTCATAACCTTTTTGGTGGAGAGCGAGTTCAGTCAGAAAGCCCCAATACCGCAGCAACCGATAGAAATAATGTTTCGCGCATTCAATCTCAACCGCAGACAGACAATAATCAACATCCTGATTCTAATCCGATTTCAAGGTTGTTAGTGCAAAGAGCTGCTTCATTTTCATCCATTTCATCAAGATTAAATTCTGCAATGGATTCTGCAGAAAGACTCGTTCAGGACCTTGAATCATATATCCATCGCGACCATACAGGAGAAAGCAGGCAGTTAAATCCTCCTGATGCTGATAGAAATCCAACTTTTAGTGCTACTGCTACAAACCGGTCAGAGAGTCTGACTCAAGATGTTGCTGCAGCCAATTCTGCAACTGCAACTTCTGTGTCTCCTATAAGCAGTAATGTTGACACAGTTGCTGTTATAGACTCAGGAATTCAGACAACAGATGATAATGTACAGATTAGGCCCTTAGACCCTTCTACATCTTCATGGAGAACTGATGTTCCAAGAGAGCGCCGAAGAAGATTGCGATGA	1209	0.4475	MEPLDPTYTSGVELGSSTESAHVHIEDHFRHLEAVTSRARQRLRLTPVHSPIQITNFSGEATTIADVPGEARERREVEEKVVESGRGVKRSGADLIAKALGLEEPGASKGGSSTGNFFDCNICLEMARDPVLTCCGHLFCWPCFYKLSYAYSNARECPVCNGEVTEADLVPIYGKSSSSGDHRLELEEAGLSIPPRPMAQRVDGIRQQLVRQGASSSIVRHILQFHNLFGGERVQSESPNTAATDRNNVSRIQSQPQTDNNQHPDSNPISRLLVQRAASFSSISSRLNSAMDSAERLVQDLESYIHRDHTGESRQLNPPDADRNPTFSATATNRSESLTQDVAAANSATATSVSPISSNVDTVAVIDSGIQTTDDNVQIRPLDPSTSSWRTDVPRERRRRLR*	403

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g4734	402	MobiDBLite	consensus disorder prediction	376	402	-	-
	Lja3g4734	402	CDD	RING-HC_AtRMA_like	118	162	-	-
	Lja3g4734	402	PANTHER	ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN	12	335	-	-
	Lja3g4734	402	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	12	335	IPR045103	GO:0005783\|GO:0006511\|GO:0061630
	Lja3g4734	402	MobiDBLite	consensus disorder prediction	317	334	-	-
	Lja3g4734	402	Pfam	zinc-RING finger domain	120	161	IPR001841	-
	Lja3g4734	402	SUPERFAMILY	RING/U-box	116	173	-	-
	Lja3g4734	402	SMART	ring_2	120	160	IPR001841	-
	Lja3g4734	402	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	108	204	IPR013083	-
	Lja3g4734	402	ProSiteProfiles	Zinc finger RING-type profile.	120	161	IPR001841	-
	Lja3g4734	402	MobiDBLite	consensus disorder prediction	308	334	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g4734	Lja-Chr3	89412877	89414891	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g4734	52	229	C3H Transcription Factor Family	AT3G58030	38.889	8.89e-37	137