Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4733 ATGCTTCCTTCAAGGCAACCTCCAATTCTCATCAGTCCAAACTCTCTTCCCTTAGCTACTTGTATTTTCTGCCTATGCCCTGTAAGAAAGAAGGTGATCATGGAGCTAGGCCTAAGCTTAGGAGACAATTCAAGACCTTTCAGCTTCATGGAAGAGCCTCGTGAAGCTTCCAACCAATCAGGTTTACAATTTAACACCACCTTATCAATTGGTCCAGTCATTACTAAACAAATAGATCAACAACAAGAACAAGAACTACTAACAGTACAAAGAAACAAACACAAGAGTGACAGCACCACAGAAGATCAAAATCATGAAGCTACAAATGAATCCCTTCTTTGTCCTTCTCTCAAAGCCAATAACAAACGTGATATTCTACCTCACTTTTCATCTGGTGGTACTTCAAGGGGCTTCGACATGAACATGCCGGCGGAGGATGAGGCCGAGGAAGAGGCGGCGCTGTCATCGTCCCCCAACATGTTCAGAAGAAAGGGGAGGAGGAGTGATGAAGATGAGAACCGTGGCAGAACCAGGAAGAGGCTTAGACTTTCTAAGGAACAATTTAGTTTCCTTGAAGAAAGCTTCAAAGACCACAACACTCTTAACCCTAAACAAAAGATTGCTCTTGGGAAACAACTCCATCTTCACCCTCGCCAAATAGAAGTATGGTTTCAAAACAGAAGAGCAAGGACCAAGCTGAAGAAGATAGAACTTGACTGTAAGTACTTGAAGAAGTGCTGTGACACACTTACAGAAGAGAATACAAGGCTTCACAAGGAGCTTCAAGAGTTGAGGGCTTTGAAGACTAGTATTGATGATTGA 822 0.4282 MLPSRQPPILISPNSLPLATCIFCLCPVRKKVIMELGLSLGDNSRPFSFMEEPREASNQSGLQFNTTLSIGPVITKQIDQQQEQELLTVQRNKHKSDSTTEDQNHEATNESLLCPSLKANNKRDILPHFSSGGTSRGFDMNMPAEDEAEEEAALSSSPNMFRRKGRRSDEDENRGRTRKRLRLSKEQFSFLEESFKDHNTLNPKQKIALGKQLHLHPRQIEVWFQNRRARTKLKKIELDCKYLKKCCDTLTEENTRLHKELQELRALKTSIDD* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4733 273 CDD homeodomain 178 235 IPR001356 GO:0003677
Lja3g4733 273 PANTHER - 34 270 - -
Lja3g4733 273 Gene3D - 170 238 - -
Lja3g4733 273 Pfam Homeodomain 178 232 IPR001356 GO:0003677
Lja3g4733 273 MobiDBLite consensus disorder prediction 162 177 - -
Lja3g4733 273 Coils Coil 247 267 - -
Lja3g4733 273 MobiDBLite consensus disorder prediction 90 177 - -
Lja3g4733 273 SMART HOX_1 176 238 IPR001356 GO:0003677
Lja3g4733 273 SUPERFAMILY Homeodomain-like 168 234 IPR009057 -
Lja3g4733 273 Pfam Homeobox associated leucine zipper 234 268 IPR003106 GO:0006355|GO:0043565
Lja3g4733 273 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 34 270 - -
Lja3g4733 273 MobiDBLite consensus disorder prediction 90 104 - -
Lja3g4733 273 SMART halz 234 273 IPR003106 GO:0006355|GO:0043565
Lja3g4733 273 ProSiteProfiles 'Homeobox' domain profile. 174 234 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4733 Lja-Chr3 89409974 89411567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4733 131 270 Homeobox Transcription Factor Family AT2G44910 49.714 9.20e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja3g4733 Homeodomain 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4733 K09338 - gmx:100778742 241.121