Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4729 ATGAGAGTTGAAGCCTTGTCATTCATAGTGTTTTTCATGGTGTTGGTTGAGTTAGTGGGTTCTCATCCTCTCAACCGTGGCACATTTCCAAGGGATTTCTTATTTGGAACTGCATCATCTTCTTACCAGTATGAAGGTGCAGCAAACGAAGGGGGAAGAAGACCAAGTATATGGGACACCTTCACTCATAGACATCCTGAAAAGATAAAGGACCATAGTACTGGAGACCTTGCTGTTGATTCTTATCATCGCTACAAGGAAGATGTGGGAATAATGAAGGATATAGGATTTGGTGCATACAGATTCTCTATCTCATGGTCCAGGGTTCTACCTGGTGGAAACCTGAAGGGAGGCATAAACAGAGAAGGCATCACATACTACAACAATCTTATCAATGAACTCCTCTCAAATGGTTTACAGCCCTTTGTAACTCTATTTCACTGGGATCTACCTCAAACTCTTGAAGATGAGTATGGTGGATTTCTGAGCCCCAATATAGTGAAGGATTTGGCAGACTATGCAGATCTATGCTACAGAGAATTTGGAGACAGAGTGAAACACTGGATTACTATAAATGAGCCACTCACCTACACCACACAAGGTTATGCAAGTGGAGTCTTTGCACCAGGAAGATGCTCCAGGTGCGGTGCAGGGGATTCTAGCACTGAGCCCTACCTGGTCTCTCACCACCAGATTCTTGCTCATGCAGCTGCTGTCAAAGTCTATAGAGACAAGTACCAGATTTCTCAGAAGGGACAAATTGGGATAACATTGAACACTGCATGGGTAATTCCACTTTCCCAGTCAAAGGCAGATATTGATGCAGCATCTAGGTCCCTTGCTTTCCAATATGGCTGGTTTATGGAGCCACTAAAATCTGGATCATACCCTATTGAAATGGTCAATAATGTTGGCAGAAGATTGCCAACATTTTCAAGGGAACAATCCTTGATGGTTAAAGGGTCCTTTGATTTCATAGGAGTTAACTATTACTCTGCAACCTATGCAGCTAATGCCCCTTGCATAAGGGAAAATCCATCTCTTTTTACAGATGCTTGTGTTACTATCACAACAATGAGAGATGGAGTTCCAATTGGCCAAAAGGCTGCTTCAGACTGGTTATACATCTACCCTAGAGGAATTCGAGATCTTTTACTTTACACGAAGGAAAAGTATAACAATCCAGTCATTTACATAACAGAAAATGGGGTTAATGAACTTAATGATGGTAGAAAATCACTTGAGGACAACATTAGAGTGAAGTATATCAGGAGGCATCTTACCTATGTTCAGAGTGCCATACAGAGTGGTGTGAATGTGAAAGGCTACTTTGCATGGTCATTGTTGGACAATTTTGAATGGGCAGATGGGTATAGTGTCCGATTTGGGATCGTTTATGTTGATTATAAGGATGGATTGCGCAGATATCCTAAGAAATCAGCTCAGTGGTTGAAAAAGTTCCTCCATCGATAG 1473 0.4182 MRVEALSFIVFFMVLVELVGSHPLNRGTFPRDFLFGTASSSYQYEGAANEGGRRPSIWDTFTHRHPEKIKDHSTGDLAVDSYHRYKEDVGIMKDIGFGAYRFSISWSRVLPGGNLKGGINREGITYYNNLINELLSNGLQPFVTLFHWDLPQTLEDEYGGFLSPNIVKDLADYADLCYREFGDRVKHWITINEPLTYTTQGYASGVFAPGRCSRCGAGDSSTEPYLVSHHQILAHAAAVKVYRDKYQISQKGQIGITLNTAWVIPLSQSKADIDAASRSLAFQYGWFMEPLKSGSYPIEMVNNVGRRLPTFSREQSLMVKGSFDFIGVNYYSATYAANAPCIRENPSLFTDACVTITTMRDGVPIGQKAASDWLYIYPRGIRDLLLYTKEKYNNPVIYITENGVNELNDGRKSLEDNIRVKYIRRHLTYVQSAIQSGVNVKGYFAWSLLDNFEWADGYSVRFGIVYVDYKDGLRRYPKKSAQWLKKFLHR* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4729 490 Pfam Glycosyl hydrolase family 1 27 488 IPR001360 GO:0004553|GO:0005975
Lja3g4729 490 PANTHER GLYCOSYL HYDROLASE 8 488 IPR001360 GO:0004553|GO:0005975
Lja3g4729 490 SUPERFAMILY (Trans)glycosidases 16 488 IPR017853 -
Lja3g4729 490 Gene3D Glycosidases 13 490 - -
Lja3g4729 490 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 33 47 IPR033132 -
Lja3g4729 490 PRINTS Glycosyl hydrolase family 1 signature 437 454 IPR001360 GO:0004553|GO:0005975
Lja3g4729 490 PRINTS Glycosyl hydrolase family 1 signature 461 473 IPR001360 GO:0004553|GO:0005975
Lja3g4729 490 PRINTS Glycosyl hydrolase family 1 signature 322 336 IPR001360 GO:0004553|GO:0005975
Lja3g4729 490 PRINTS Glycosyl hydrolase family 1 signature 397 405 IPR001360 GO:0004553|GO:0005975
Lja3g4729 490 PRINTS Glycosyl hydrolase family 1 signature 416 427 IPR001360 GO:0004553|GO:0005975
Lja3g4729 490 ProSitePatterns Glycosyl hydrolases family 1 active site. 397 405 IPR018120 -
Lja3g4729 490 PANTHER BETA-GLUCOSIDASE 16 8 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4729 Lja-Chr3 89386185 89390088 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4729 1 488 Glycoside Hydrolase AT5G44640 61.677 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4729 - K01188 gmx:100791121 723.005