Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4725 ATGCTCGCATACGACGTGTTTCTAAGCTTCAGAGGCGAAACCGGAACACGCTACTCCTTCACAGACCACCTCTACCATACACTGCTCCGCCATGGAATCAACGCATTCAGAGACTCTGAGAATCTCAGAACCGGGGAAGAAATCAGACCTGCACTTCTCGAAGCCATCGAAAACTCAACAATCGCAATGGTGGTGCTGTGTCAGAACTATGCATGTTCTGCATGGTGCCTTGATGAACTGGTGAAGATCATGGAGTGTTATGAGAAGAGAGGGAAACAGGTGGTGGCGGTTTTCTACAAGGTGGAACCATCTGATGTGAGGTATCAGAAAAACGGTTACGCGGCGGCCATGGCTAAACATGAAAGGAGATATGGAATGGAGTCGGAGAAGGTGAGAGCATGGAGGTCAGCTTTGTTTAGAGTCTGTGACTTGAGTGGTGAACACTGCAGGGATGATATGTATGAGTCTGAGCTTATTGAGAAGATTGTGAAAGACACCTCTGCTAAGTTACCTCCTGTGCCTTTTCAGACCAAAAATCTAGTAGGACTTGATTCTCGCCTTGAACAAGTGAAATCTCTTATTGATTCTAATGATGATGTTTGCATGTTGGGGATTTATGGAGTTGGTGGAATTGGAAAAACCACATTTGCCATTGATCTGTATAACAAGATCAGACATTGGTTTGAAGCTGCAAGTTTTATAGCCAATGTTAGAGAAAAATCAAATGAAAGCATTAATGGCCTGGAAGTTCTACAAAGGACACTTTTATCTGAGATGGGTGAGGAGACACAAACCATGATGGGTAGCACATTTAGAGGAAGCTCTGAAATAAAACGCAGGCTTGGCCATAAAAGAGTTCTTTTGGTTCTGGATGATGTTGATACTGTAAAACAATTGGAATCACTGGCTGGAGGATGTGATTGGTTTGGTCCTGGTAGCAGGGTCATTATAACAACAAGAGATGCAGATATTCTGCATAAGCATGATATTGAAATTAGAAAATATAAGATGGAAGAGCTAAATTATCATGAATCTCTTGAACTCTTATGTTGGTATGCCTTTAATATGAGCAAACCTGCACAAAACTATGCAAATGTGTCTTCTCATGCAGTAAGTTATGCAAAGGGTATTCCATTGGCTTTAAGAGTGATAGGCTCCAATTTGAAGGGTAGGAGTGTAGAGGAATGGGAGATTGAATTGCAGAAGTATAGGAAGGTTCCAGATGCTGAGATTCAAGGAGTATTGGAAATAAGCTATAATAGCCTCTCTGACTTGGACAAGAAAATTTTCCTGGACATTGCTTGTTTCTTCAAAGGGGAAAGATGGGATTATGTTAAAAAGATACTAGATGCATGTGATTTCTACCCAATTATACGAGTCTTTGTTAGTAAATGTCTAATAGCTGTTGATGAAAATGGCTGCTTGGGAATGCATGATCTAATACAGGACATGGGTAGAGAGATTGTTCGGAAGGAATCACCGTCAAACCCTGGTGAAAGAAGCAGATTATGGTCTCATAAAGAAGTTCTTGAAGTCCTTAAAGAAAACTCAGGAAGTTCTAAAATTGAAGGAATAATGCTTCATCCCCCAAACCAAGAAAAAGTTCATGATTGGACTTATACTGCCTTCGACAAGATGAAGAACCTCAGAATTCTAATAGTTCGGAATACAATATTTTTATCTGGACCTAGTTATCTGCCGAATAGTTTGCGGCTACTCGATTGGAAGGGGTACCCATCAAAGTCTTTTCCGCCAAACTTTTATCCCCGCAGAATTGTCGACTTCAAGTTACCTCATAGTTCTCTCATATTGAAAAAGCCATTTCAGATATTTGAGGACTTAACATTAATCAATCTCTCCCTGTGTCAATCCATCACTCAAATTCCTAACCTTTCTGGAGCTAAACAGTTAAGGGTGTTGACAGTTGATAAATGCCAAAAACTGGTCAGGTTTGATAAATCCATTGGATTTTTGCCTAACCTTGTGTATTTAAGTGCTTCAGGGTGCACTGAGCTCAAAAGTTTTGTGCCAAGAATGTATTTGCCCTCTCTCGAAGTTCTTTCATTTAGCTTCTGCAAGAAACTTGCACACTTCCCACAAGTAATGCAAAAGATGGATAAGCCATTAAAGATTCACATGGTAAATACTGCCATTAAGGAGTTTCCAAATTCTATTGGCAACCTTATTGGGCTAGAGTATATAGACATTTCAGCTTGCAAATGGCTCAAATATCTATCAAGTAGCTTCTTCTTTCTTCCTAAACTTGCCACATTAAAAGTTGATGAGTGCTCTCAACTTGGAGAATCATTTAAAAGGTTCACAAGACACTCAGTAGCAAATGGCTGTCCAAATTTAATGATGCTTCATTTAAGCAAGGCTAATCTATCATATGAAGATCTTATTGCCATTCTTGGAAATTTTCCAAAACTGGAAGACTTGAATGTATCGCACAATGAATTTGTCACCCTCCCTCAATGCATCAATGGATCTTTGCATTTGAAACGTCTTGATGTGAGTTTCTGTAGGAATCTTATTGATATGCCAGAACTTCCTACTAGTATTCAGAAAGTAGATGCAAGACACTGTGGATCCTTAAGTTTAGAGGCATCAAGCATGCTATGGTCTAAGGTTTCCGCAGGGACCCGAAGAATACAAATTGTGATGCCAATGCTGAAAAGGGACATTCCAGAATGGTTTGACTGCATTTCCACTCAAGAGTCTCCGCTTTTATGGGCTCGCAAGAAGTTTCCCATTGCTGCTTTAGCATTAGTTTTCCAGGAAGTAAAAGAGAGGGACACATTTTCTGAATTTGAAGATGCTATAAGAATGTCAACTGGGTTCATGGGCTGGCACACTGTTAGCCTTCACTTGTTTATCGACGGCCAAGAAATATGTGGCAGAGATTACCACCATTTCACTGTTGGGGAAGATCACGTGTTATTATGTGATCTACGAGTTTTGTTTAGTGATGAAGAGTGGCAGGGTCTTGATGCAAGTATTGGAGATGATTGGAAGGTCATTCAAGTTCAATATCATTCAGACATGGTTCTGAGTAAATGGGGAGTTTATGCATACAAGCAAGAAACAAACATGGATGATATCCAATTCAGGCTTCCCAATCCCAACTCCATTAGGGATCACATGCAGTCATCCCTTTTGGTTCCAAATGTATCTGAAGAGAAAAGAATGAGATATATGCTGGAAAGTTTTAATCCAAGAGACATGTTTAACCAGTATTTGCCTCTATTAGAATCAGAAGGAAGTCCAGGGATTTCTGTAAAAATATATTTGAGATCCTTGAGGGAAGTTAAGGCAGAAATCAGAGAGAAAACTTCAGCATCTGCCTATGGAGCAAGTTTAAAACAAGAACATGAAGAATCTGTCGATGATGTGGTACAGATTTTAGAGATGATGAAGGAGAATATACCAAAACATGTTGCTGATTCATACCCTCAAGATTTGCAAGTTGCAGGAGGATTTGCCGAAAGAATATTGAGGGCACGGATAGAAATAATGAAGGAAAACGGGTTTGAATTTGGTATGCCTATCATTCTAGAGTATACTGATACCGGAGGAGATACATTGCGACGCATTTGGGGAGTCTTGGAGACAAAAGTAGGAGATCCATTTTTCAAAGCAGTGTTGAGGAGGCAAAATCAACTTTTGTGGGAATCTTGGTCCAGCAATGAAGATTCAAGCTCTGGATCTTCCTTGGAAAACCTTCGGGTAACCATTGTTGTATTGAAATGTCATTGTCCAGCTTCAGAGGAAACTTCAAGCTCTGGCTATGAGGAATCCTTGGAGGAAGGATACTACTGTCCTGAACTAGAAGAGTTAATGAGGAAGATAGAGCAAGACGCAATGAGCTTGAATAAATCTTACGGGAAAATGAAGGCATCTATTGTTCGAACAGATGAATCAATTTCAGAAAAGTATCTAGTGGAATCATTAGTGATCAGAAGGCTAGTGGCATTGAAAAGATTAACAATGTTTGGGGCTATGATCAAGTTCAAGAAAACACCTTATGGAATGATTAGGGTAGATGACGATCCTTTTGTCACTCTGAAGATGTGTATCTGGGGTTCAGCATTTGTTCTTATGGTCCTAATCATGTTGTTATTTTATCTTATGGTACGTGTGGGGATTTTTCTTTATAGGATACCAATAATAAGACAGTTTTTTGCGTGTGGTTGGTGGCTTGTCATGCAAATTCTTGTGGCTTGTAAATACTTATACTGGAGAATTGGTCAGATTATGAAAAGAAAGGAGAAGGAATTGTAG 4281 0.3971 MLAYDVFLSFRGETGTRYSFTDHLYHTLLRHGINAFRDSENLRTGEEIRPALLEAIENSTIAMVVLCQNYACSAWCLDELVKIMECYEKRGKQVVAVFYKVEPSDVRYQKNGYAAAMAKHERRYGMESEKVRAWRSALFRVCDLSGEHCRDDMYESELIEKIVKDTSAKLPPVPFQTKNLVGLDSRLEQVKSLIDSNDDVCMLGIYGVGGIGKTTFAIDLYNKIRHWFEAASFIANVREKSNESINGLEVLQRTLLSEMGEETQTMMGSTFRGSSEIKRRLGHKRVLLVLDDVDTVKQLESLAGGCDWFGPGSRVIITTRDADILHKHDIEIRKYKMEELNYHESLELLCWYAFNMSKPAQNYANVSSHAVSYAKGIPLALRVIGSNLKGRSVEEWEIELQKYRKVPDAEIQGVLEISYNSLSDLDKKIFLDIACFFKGERWDYVKKILDACDFYPIIRVFVSKCLIAVDENGCLGMHDLIQDMGREIVRKESPSNPGERSRLWSHKEVLEVLKENSGSSKIEGIMLHPPNQEKVHDWTYTAFDKMKNLRILIVRNTIFLSGPSYLPNSLRLLDWKGYPSKSFPPNFYPRRIVDFKLPHSSLILKKPFQIFEDLTLINLSLCQSITQIPNLSGAKQLRVLTVDKCQKLVRFDKSIGFLPNLVYLSASGCTELKSFVPRMYLPSLEVLSFSFCKKLAHFPQVMQKMDKPLKIHMVNTAIKEFPNSIGNLIGLEYIDISACKWLKYLSSSFFFLPKLATLKVDECSQLGESFKRFTRHSVANGCPNLMMLHLSKANLSYEDLIAILGNFPKLEDLNVSHNEFVTLPQCINGSLHLKRLDVSFCRNLIDMPELPTSIQKVDARHCGSLSLEASSMLWSKVSAGTRRIQIVMPMLKRDIPEWFDCISTQESPLLWARKKFPIAALALVFQEVKERDTFSEFEDAIRMSTGFMGWHTVSLHLFIDGQEICGRDYHHFTVGEDHVLLCDLRVLFSDEEWQGLDASIGDDWKVIQVQYHSDMVLSKWGVYAYKQETNMDDIQFRLPNPNSIRDHMQSSLLVPNVSEEKRMRYMLESFNPRDMFNQYLPLLESEGSPGISVKIYLRSLREVKAEIREKTSASAYGASLKQEHEESVDDVVQILEMMKENIPKHVADSYPQDLQVAGGFAERILRARIEIMKENGFEFGMPIILEYTDTGGDTLRRIWGVLETKVGDPFFKAVLRRQNQLLWESWSSNEDSSSGSSLENLRVTIVVLKCHCPASEETSSSGYEESLEEGYYCPELEELMRKIEQDAMSLNKSYGKMKASIVRTDESISEKYLVESLVIRRLVALKRLTMFGAMIKFKKTPYGMIRVDDDPFVTLKMCIWGSAFVLMVLIMLLFYLMVRVGIFLYRIPIIRQFFACGWWLVMQILVACKYLYWRIGQIMKRKEKEL* 1427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4725 1426 Gene3D - 170 335 IPR027417 -
Lja3g4725 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 433 IPR027417 -
Lja3g4725 1426 PRINTS Disease resistance protein signature 679 695 - -
Lja3g4725 1426 PRINTS Disease resistance protein signature 202 217 - -
Lja3g4725 1426 PRINTS Disease resistance protein signature 374 388 - -
Lja3g4725 1426 PRINTS Disease resistance protein signature 280 294 - -
Lja3g4725 1426 Gene3D Ribonuclease Inhibitor 535 711 IPR032675 -
Lja3g4725 1426 Gene3D Ribonuclease Inhibitor 712 875 IPR032675 -
Lja3g4725 1426 Coils Coil 1121 1141 - -
Lja3g4725 1426 CDD AAA 181 325 - -
Lja3g4725 1426 Gene3D - 339 423 IPR042197 -
Lja3g4725 1426 Pfam NB-ARC domain 186 402 IPR002182 GO:0043531
Lja3g4725 1426 SUPERFAMILY L domain-like 529 868 - -
Lja3g4725 1426 ProSiteProfiles TIR domain profile. 2 170 IPR000157 GO:0007165
Lja3g4725 1426 Gene3D - 2 169 IPR035897 -
Lja3g4725 1426 Pfam TIR domain 3 176 IPR000157 GO:0007165
Lja3g4725 1426 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 146 IPR035897 -
Lja3g4725 1426 SMART till_3 3 144 IPR000157 GO:0007165
Lja3g4725 1426 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 1109 IPR044974 GO:0006952
Lja3g4725 1426 SUPERFAMILY "Winged helix" DNA-binding domain 410 514 IPR036390 -
Lja3g4725 1426 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 12 1109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4725 Lja-Chr3 89353386 89359803 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4725 4 795 WRKY Transcription Factor Family AT4G12020 30.590 1.97e-89 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4725 - - mtr:MTR_4g023040 1859.34