Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4720 ATGGGAAATCACGATGCAACATACTCAGATCATTTCACGTATGATGTTTTTCTTCTGAGTTTTTCAGAAAAAGAAAGCTGCGTTTTTACTGATTATCTCTACCAAGCTTTGCTCGATGATGGAATCAAAACTATCAGATACAATGACAAAACACACTCTCTTGTTGAGAAGACAATTGAGGAATCCAGATTGTCAATGGTGGTGTTGTGCGAAAACTACGCGTATTCCCCTACGTGTCTCGATGTACTTGTCAATATTATTGAGTGTTATGATGCCAAAGCGAAACAGGTTTCAGTCATTTTTTACAAAGTGGAGCCATCGGATGTTTGGCTTCAGGAAAATTCTTATGCAGCAGCTATGATTGAACATGAAAAGAATTTTGGTCATGACTTGGACAGGGTGAAAACATGGAGGTCAGCCCTGTCTAGAATCAAAGACCTTAGTGGAGAATACTGCACGGACGACAAGTATGAATCTGGCTTCATCAAGATGATTGTTAAGGCCACCTCTGCTAAATTGCCTCCTCCTCCCGTGCCTTTAGAAATGAAGCACCTAGTGGGACTTGATTCTCGATTTGAAGAGGTGAGATCACTTTTAGATATTGAATCCAATGACGCTGTTTGCATGTTGGGAATTCATGGAGATGCTGGAATAGGCAAAACCACACTTGCCGCATATTTGTATAACAAGATCAGGCATCAATTTGAAGCTGCCAGTTTTCTTTCTAATATAAGAGAAAAATCAAACAATGGTAACATCACTAATACTCTGGAAGATCTTCAAAAGACACTTCTATATGAGACTGTTAAGGAAACACAAGTCATGACGAGAAATACATTTGAAGGACGATCTCAAATAAAATCCAAGCTTAGTCATAAAAGGGTTCTATTGATTCTGGATGATGTTGATGATATAGAACAATTGGAAGCACTTGCCGGAGGATGTGATTGGTTTGGTTCCGGTAGCAGGATCATTATAACAACAAGAGATGAAAATGTGCTAGATAAGCACCAGGTTGCAATTAAGAAATATAAAATACAGGAGTTAAACTTCGGTGACTCACTTGAACTCATGTGTTTGTATGCCTTTGATATGAGCAAACCTGCAGAGGACTATGAAGATATTTCTAATGATGTGGTAAGTTATGCACGGGGTTTCCCACGAGCTTTAAAAGTCCTAGGGTCTCATTTGAAGGGTCTAAGCGTAAAGGAATGGAAGATGGAGTTGAAGAAATTTAGAAAGGTTCCAAATGCTTTTTCTTTTTTGGCAGATTCTTTCTGA 1281 0.388 MGNHDATYSDHFTYDVFLLSFSEKESCVFTDYLYQALLDDGIKTIRYNDKTHSLVEKTIEESRLSMVVLCENYAYSPTCLDVLVNIIECYDAKAKQVSVIFYKVEPSDVWLQENSYAAAMIEHEKNFGHDLDRVKTWRSALSRIKDLSGEYCTDDKYESGFIKMIVKATSAKLPPPPVPLEMKHLVGLDSRFEEVRSLLDIESNDAVCMLGIHGDAGIGKTTLAAYLYNKIRHQFEAASFLSNIREKSNNGNITNTLEDLQKTLLYETVKETQVMTRNTFEGRSQIKSKLSHKRVLLILDDVDDIEQLEALAGGCDWFGSGSRIIITTRDENVLDKHQVAIKKYKIQELNFGDSLELMCLYAFDMSKPAEDYEDISNDVVSYARGFPRALKVLGSHLKGLSVKEWKMELKKFRKVPNAFSFLADSF* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4720 426 ProSiteProfiles TIR domain profile. 12 173 IPR000157 GO:0007165
Lja3g4720 426 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 20 417 - -
Lja3g4720 426 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 149 IPR035897 -
Lja3g4720 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 416 IPR027417 -
Lja3g4720 426 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 417 IPR044974 GO:0006952
Lja3g4720 426 SMART till_3 13 147 IPR000157 GO:0007165
Lja3g4720 426 Gene3D - 171 343 IPR027417 -
Lja3g4720 426 Gene3D - 349 422 IPR042197 -
Lja3g4720 426 CDD AAA 186 331 - -
Lja3g4720 426 Pfam TIR domain 14 172 IPR000157 GO:0007165
Lja3g4720 426 Pfam NB-ARC domain 192 413 IPR002182 GO:0043531
Lja3g4720 426 Gene3D - 8 170 IPR035897 -
Lja3g4720 426 PRINTS Disease resistance protein signature 209 224 - -
Lja3g4720 426 PRINTS Disease resistance protein signature 383 397 - -
Lja3g4720 426 PRINTS Disease resistance protein signature 289 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4720 Lja-Chr3 89312077 89315250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4720 2 395 WRKY Transcription Factor Family AT4G12020 28.535 2.06e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4720 - - lja:Lj3g3v0465900.1 518.464