Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4718 ATGGTTCGCTCTCATGGCGTCACTCTCTTCAATCGCCTTGCTCGTCAATCTCTCTATAACGCCACCGACAATTCCGTATATCAAGCACTGTTCCAAAGGGGTTATAGGGTATTGAATTCAGGGCTTTGCAATCCATCCAGAGTTGTTGGTAGTTCTGCACCACATGTTGGAAGTGGATTTTATTTGAAGAACTGGGTGCTATTGGGAGCAGCTAATCCATATTCAGGGGCATCCAGATCAATTCATGGCTCGGCACCATTGGCAAGGGACTATTATGATGTTCTTGGTGTGAGTAAGAATGCAAGTTCTTCCGAAATAAAGAAAGCTTACTATGGGCTTGCAAAGAAGCTTCATCCAGACACAAATAAGGGTGATCCTGAGGCTGAAAAGAAGTTTCAAGAAGTTTCATTGGCATATGAGGTTTTGAAGGATGAGGAACGACGTCAACAGTATGATCAGGTTGGCCATGATGCTTATGTAAACCAACAAAGCACTGGTTCTGGGGGCGAGGGTGGCTTTGGCTTCAATCCTTTTGAGCAGATGTTCCGTGATCATGACTTTGTCAAGAGCTTTTTCCATCAGAATATTGGCGGAGAGGATGTTAAGGCTTTCATTGAACTATCTTTCATGGAAGCTGTCCAAGGGTGCACCAAAATTTTGACATTTCAAACAGATATGCTTTGCAATACTTGTGGTGGGAGTGGTGTTCCTCCTGGTACAAGACCTGAAACTTGTAGCCGATGTAAAGGGTCAGGAGTGGTATTTGCACAAGCTGGCTTTTTCAAAATGGAGAGTACTTGTGGAACCTGTAAGGGAACTGGAAAAATCGTATCGAATTTCTGCAAGTCTTGCAGGGGTGCAAAGGTTGTGAAAGGAACAAAGTCAGTCAAGTTGGATGTTATGCCTGGGATAGACAACAATGAGACTCTAAAGGTGTTTAGAAGCGGTGGAGCTGATCCTGACGGAAATCATCCTGGTGATCTTTATGTTACTATCAAGGTTAGGGAAGATCCTGTTTTTCGCAGAGAAGGATCTGATATTCACGTAGATGCTGTCTTAAGTATCACTCAGGCGATTTTGGGGGGAACTATTCAAGTACCAACTCTTACTGGAGATGTTGTTCTGAAGGTTCGCCCGGGCACCCAACCTGGTCAAAAAGTGGTTTTGAAAAATAAAGGGATCAAGACAAAAAATTCTTACACATTTGGGAATCAATATGTTCATTTTAATGTCAGCATCCCAACAAACCTGACGGAGAGACAGCGGGAATTGATTGAAGAGTTTGTTAAGGAAGAACGAGAGGCTTCTGATAAACAGAGAGAAGCTTCAGCTTCAGCTTCTGGTTGA 1347 0.4336 MVRSHGVTLFNRLARQSLYNATDNSVYQALFQRGYRVLNSGLCNPSRVVGSSAPHVGSGFYLKNWVLLGAANPYSGASRSIHGSAPLARDYYDVLGVSKNASSSEIKKAYYGLAKKLHPDTNKGDPEAEKKFQEVSLAYEVLKDEERRQQYDQVGHDAYVNQQSTGSGGEGGFGFNPFEQMFRDHDFVKSFFHQNIGGEDVKAFIELSFMEAVQGCTKILTFQTDMLCNTCGGSGVPPGTRPETCSRCKGSGVVFAQAGFFKMESTCGTCKGTGKIVSNFCKSCRGAKVVKGTKSVKLDVMPGIDNNETLKVFRSGGADPDGNHPGDLYVTIKVREDPVFRREGSDIHVDAVLSITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTKNSYTFGNQYVHFNVSIPTNLTERQRELIEEFVKEEREASDKQREASASASG* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4718 448 Gene3D DnaJ domain 87 199 IPR036869 -
Lja3g4718 448 SUPERFAMILY Chaperone J-domain 89 192 IPR036869 -
Lja3g4718 448 CDD DnaJ_C 199 417 - -
Lja3g4718 448 Gene3D - 228 288 - -
Lja3g4718 448 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 215 291 IPR036410 -
Lja3g4718 448 CDD DnaJ 90 144 IPR001623 -
Lja3g4718 448 ProSiteProfiles Zinc finger CR-type profile. 215 293 IPR001305 GO:0031072|GO:0051082
Lja3g4718 448 Gene3D - 335 445 - -
Lja3g4718 448 PANTHER DNAJ-CLASS MOLECULAR CHAPERONE 31 443 - -
Lja3g4718 448 SMART dnaj_3 89 147 IPR001623 -
Lja3g4718 448 ProSitePatterns Nt-dnaJ domain signature. 132 151 IPR018253 -
Lja3g4718 448 Coils Coil 421 441 - -
Lja3g4718 448 Gene3D - 200 330 - -
Lja3g4718 448 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 31 443 - -
Lja3g4718 448 Pfam DnaJ central domain 228 288 IPR001305 GO:0031072|GO:0051082
Lja3g4718 448 ProSiteProfiles dnaJ domain profile. 90 155 IPR001623 -
Lja3g4718 448 SUPERFAMILY HSP40/DnaJ peptide-binding domain 339 425 IPR008971 GO:0006457|GO:0051082
Lja3g4718 448 SUPERFAMILY HSP40/DnaJ peptide-binding domain 200 335 IPR008971 GO:0006457|GO:0051082
Lja3g4718 448 PRINTS DnaJ domain signature 92 110 IPR001623 -
Lja3g4718 448 PRINTS DnaJ domain signature 110 125 IPR001623 -
Lja3g4718 448 PRINTS DnaJ domain signature 127 147 IPR001623 -
Lja3g4718 448 PRINTS DnaJ domain signature 147 166 IPR001623 -
Lja3g4718 448 Pfam DnaJ C terminal domain 205 414 IPR002939 -
Lja3g4718 448 CDD DnaJ_zf 228 288 IPR001305 GO:0031072|GO:0051082
Lja3g4718 448 Hamap Chaperone protein DnaJ [dnaJ]. 87 442 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lja3g4718 448 Pfam DnaJ domain 90 152 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4718 Lja-Chr3 89278181 89297308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4718 90 154 Miscellaneous Gene Families AT1G16680 37.313 1.16e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4718 K03686 - gmx:100799735 776.163