Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4706 ATGGCTCAATGGCAGGGTGATTCGGATGAGGGTATCGACTATATGTTCAAGGTTGTCATGGTTGGAGACTCTGGGGTTGGGAAATCTCAGCTTTTGAATAGGTTTGTGAGGAATGAGTTCCAAATGAAATCCAAAGCCACAATTGGGGTTGAATTTCTGACCAAGACTGTTGTCATGGATCACAAGGTAGTCAAGGCACAGATTTGGGACACTGCTGGTCAAGAAAGGTACCAGGCAATTACAACTGCATATTACAGAGGTGCAACTGGCGCGTTACTAGCATATGACATAACCAATCGCCAATCCTTTGATCATGTTGAGAAGTGGCTCGATGAGCTGCGTGTACATGCAGATAATATAATTGTCATGCTTGTTGGCAACAAGTCTGACCTTAGTTCTGGTCGAGCAGTGCCTATGGAGGAAGCCAAAGACTTCGCCAAACAAAAGGGCCTCTTCTTCGTCGAGACATCAGCACTTGACTCCAACAATGTGGAATCTGCTTTCCTGGGTCTCCTCTCTCAAATATATGCAACAGTCGGTAAGAAGCACATCATTGCAGAGGGAGCTGAGTTGAATTGGGATAAAGTAAACCTTGAACTTGAAGGAATAAAAATTAAGGTCTCATCACAAGAAGCTGAATGCCAAAAAGCTAAAAGGAGATTCAACTGTTGCAGTGTTTTTTAA 684 0.4357 MAQWQGDSDEGIDYMFKVVMVGDSGVGKSQLLNRFVRNEFQMKSKATIGVEFLTKTVVMDHKVVKAQIWDTAGQERYQAITTAYYRGATGALLAYDITNRQSFDHVEKWLDELRVHADNIIVMLVGNKSDLSSGRAVPMEEAKDFAKQKGLFFVETSALDSNNVESAFLGLLSQIYATVGKKHIIAEGAELNWDKVNLELEGIKIKVSSQEAECQKAKRRFNCCSVF* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4706 227 SMART rho_sub_3 18 174 IPR001806 GO:0003924|GO:0005525
Lja3g4706 227 PRINTS Transforming protein P21 ras signature 16 37 - -
Lja3g4706 227 PRINTS Transforming protein P21 ras signature 39 55 - -
Lja3g4706 227 PRINTS Transforming protein P21 ras signature 57 79 - -
Lja3g4706 227 PRINTS Transforming protein P21 ras signature 153 175 - -
Lja3g4706 227 PRINTS Transforming protein P21 ras signature 118 131 - -
Lja3g4706 227 Pfam Ras family 17 176 IPR001806 GO:0003924|GO:0005525
Lja3g4706 227 ProSiteProfiles small GTPase Rho family profile. 9 186 - -
Lja3g4706 227 TIGRFAM small_GTP: small GTP-binding protein domain 14 168 IPR005225 GO:0005525
Lja3g4706 227 Gene3D - 5 217 IPR027417 -
Lja3g4706 227 SMART ran_sub_2 21 221 - -
Lja3g4706 227 Coils Coil 200 220 - -
Lja3g4706 227 PANTHER - 1 225 - -
Lja3g4706 227 PANTHER RAB GTPASE-LIKE PROTEIN G3A 1 225 - -
Lja3g4706 227 SMART ras_sub_4 16 178 - -
Lja3g4706 227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 181 IPR027417 -
Lja3g4706 227 SMART rab_sub_5 16 178 - -
Lja3g4706 227 CDD Rab11_like 13 176 - -
Lja3g4706 227 ProSiteProfiles small GTPase Ras family profile. 10 227 IPR001806 GO:0003924|GO:0005525
Lja3g4706 227 ProSiteProfiles small GTPase Rab1 family profile. 11 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4706 Lja-Chr3 89105086 89106775 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4706 K07904 - gmx:100789008 387.111