Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4705 ATGAGTCTTGTGTATAGTCATGCTCTAAAGTACTCTGAAGGGGAAGTAAGGAGGAACCAAGAAATGGATTCAAATAATATTGGTTACCCACAACAACATTGTCACCAGCAAAATTCTGGACTATTGAGGTACAATTCTGCTCCAAGCTCACTGCTGAAAAGCCTTACGGATGAGGAACCTTTCAGAAGTGAGGATCATAATCAGAATTACCCTCCCTCCACAAGTTCAGATATGGAATCCATGTTGGCCAAGTTGATTTCATCCAATTCAGAACCTTTGCATGAGGTTGGAGACAACCCAGTGAAGCAAGAAATAAACCCTGTTTCAAAACATAATGGTTACTCTTATGTTTCTCCATCTCAAATAACTTACCAACCTCAGCAAACTCAAGGTTTGCCTAATGGTTCTTTAGGTGCTTCTGGGAATTCTTTTGATGGCTCATTGAGTGCAGTGAGGGCTCTAGCTCCTGAAAATTACACACAAAATAAAGGGGGTTCTAGCAATTTCTCCTCCAATCTCATAAGGCAAAAGAGCTCCCCTGCTGGGTTTTTCTCCAATTATTCAGTTGATAATGGTCTTGCAGCATTAAGAGAGGTAGGTAGTTTTGGAGCCAGTGCTGTCCCAAATGGACATGCCACTACATCAAGTAGTGGGTTACATGGTACTTTCAATTTCTCATCTAGAACATCCTCTTGCTCCACAAGGATGCCACAGATTGCTGAGACTGAACATGAAGATCTCCAAGCAAATTGTGTTGAAAGAAGAAACATTGGAAGCGATACTAGCAACACTATAAGTTACATGCCTAGCTACTTATGGGATGGTTCTGCATTCAATGCCTCCAAAACAGCCACTAACAATAGTGAATTCATGTTTGGAACCACAAATTTAATGGAAACTATGGATGCAGGGTTTGGAAGTCAAAAGCTTTTGACCCACCATTTGAGTCTTCCTAGTTCTTCTACTAAGATGGAATCCATGGACAAGTTTCTTCAAATTCAAGGATCTGTTCTGTGTAAAATTCGTGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGAAAGAAGAACACGAATTAGTTCAAGAATCAAGAAATTGCAAGGCCTCTTTCCACAATCAGACAAGCAAACAAGCACAGCAGATTTGTTGGATTTGACAACTGAGTACATCAAAGGCCTGCAGAAACAAGTTCAGATACTTACAGAAGCAAAGGCAAAGTGCACTTGTACAAGTAATTAG 1251 0.4085 MSLVYSHALKYSEGEVRRNQEMDSNNIGYPQQHCHQQNSGLLRYNSAPSSLLKSLTDEEPFRSEDHNQNYPPSTSSDMESMLAKLISSNSEPLHEVGDNPVKQEINPVSKHNGYSYVSPSQITYQPQQTQGLPNGSLGASGNSFDGSLSAVRALAPENYTQNKGGSSNFSSNLIRQKSSPAGFFSNYSVDNGLAALREVGSFGASAVPNGHATTSSSGLHGTFNFSSRTSSCSTRMPQIAETEHEDLQANCVERRNIGSDTSNTISYMPSYLWDGSAFNASKTATNNSEFMFGTTNLMETMDAGFGSQKLLTHHLSLPSSSTKMESMDKFLQIQGSVLCKIRAKRGFATHPRSIAERERRTRISSRIKKLQGLFPQSDKQTSTADLLDLTTEYIKGLQKQVQILTEAKAKCTCTSN* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4705 416 MobiDBLite consensus disorder prediction 56 77 - -
Lja3g4705 416 SMART finulus 353 403 IPR011598 GO:0046983
Lja3g4705 416 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 30 415 - -
Lja3g4705 416 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 350 409 IPR036638 GO:0046983
Lja3g4705 416 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 30 415 - -
Lja3g4705 416 Pfam Helix-loop-helix DNA-binding domain 353 398 IPR011598 GO:0046983
Lja3g4705 416 CDD bHLH_AtbHLH_like 352 404 IPR045239 -
Lja3g4705 416 Gene3D - 349 415 IPR036638 GO:0046983
Lja3g4705 416 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 397 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4705 Lja-Chr3 89096812 89102688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4705 22 410 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 34.532 8.21e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g4705 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4705 - - gmx:100795896 504.597