Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4703 ATGGATAAGGGACCACCTCATAGCCTTTTTGTTAATGATGGTTCGTTCATGGCGAGGTTCAAGCAGCTTCAACAAGAGCAGGGGAAGGGGAAGAATACCAAATTAGAGGATTCTAAACCAATTAAAGTTGTTTCTAGACCGCTGACTCCTAATCCTTCCATTGGTAAGGCTACTGATGCACGAAAAACTTCCCAGGCTGGTTCTAGTGGCAAACTTGCTTTCAGTTTAAAGCAAAAATCAAAGCTAGTTCCACCCCCTATTAAGTTGACTGATGAGGATGAAGAAGAAACTAATGCCGGGGATGTTTCAAATGACGCACCGTCGAAACGGCAAAAGTTGGGTCAGGATGATGATGCTGAGCAATCATCAAGACCACTTGATGTTGCACCTCCTTCACCTAGTGATCCTACTGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCAAAAAACGGAAGGCAATTTGAGGATGTTACACGCCAAAAAAATCCTGGCGATACACCTTTCAAGTTTTTATTTGATGAACGATGTGCTGACTACAAATATTATGAATATAGGCTCGGACAAGAGGAAAAGACCCTTTTGCAGTATAGGGAACCACAGGCAATTCATTATGTTCCGCCACTGGGTACAAGCATATCGTCTTCCAGACCAGCAAATGGTCCTCAGAGGTCTTCTGAGCAGCGGCCAACTTACCAAATCCCTGCTTCTGCTTTATATGAAAGTGGTGATGTACCAAGAACTTCGGGATCTTCAGTGCAAGCATTATCAGTTGTAAGCTCTGCTGAGCCCAGTGGATCATCAAATGCTGATTCTTTAGCACTAATGGAGTTCTACATGAAGAAAGCTGCACGGGAAGAAAGGTCAAAACAACCTAAGCAGTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCAAGGGAAGAAAGGCCATCATATGGGTGATTATATTCCCCTTGAAGAACTTGAGAAGTTCATGGCTAGCTGTAATGATGCTGGAGCACAGAAAGTTTTGAAGGAGACTGCAGAGAAGGCCAAAATCCAGGCGGATAATGTGGGCCACAAGCTTCTATCAAAAATGGGTTGGAAAGAAGGTGAGGGTTTAGGCGGCTCCAGGAAGGGTATTTCGGATCCTATCATGGCGGGAAATGTTAAGAAAGATCACTTGGGAGTAGGTGCTGTCCAACCTGGGGAGGTGACTTCTGAAGATGACATATATGAGCAGTACAAAAAGCGCATGATGCTTGGCTACCGTCACAGACCCAATCCTCTGAACAATCCTCGCAAGGCGTATTACTGA 1302 0.4462 MDKGPPHSLFVNDGSFMARFKQLQQEQGKGKNTKLEDSKPIKVVSRPLTPNPSIGKATDARKTSQAGSSGKLAFSLKQKSKLVPPPIKLTDEDEEETNAGDVSNDAPSKRQKLGQDDDAEQSSRPLDVAPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCADYKYYEYRLGQEEKTLLQYREPQAIHYVPPLGTSISSSRPANGPQRSSEQRPTYQIPASALYESGDVPRTSGSSVQALSVVSSAEPSGSSNADSLALMEFYMKKAAREERSKQPKQSKDEMPPPASLQGKKGHHMGDYIPLEELEKFMASCNDAGAQKVLKETAEKAKIQADNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGNVKKDHLGVGAVQPGEVTSEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4703 433 ProSiteProfiles G-patch domain profile. 350 397 IPR000467 GO:0003676
Lja3g4703 433 SMART G-patch_5 348 395 IPR000467 GO:0003676
Lja3g4703 433 SMART surpneu2 139 193 IPR000061 GO:0003723|GO:0006396
Lja3g4703 433 MobiDBLite consensus disorder prediction 285 313 - -
Lja3g4703 433 Pfam Surp module 140 188 IPR000061 GO:0003723|GO:0006396
Lja3g4703 433 ProSiteProfiles SURP motif repeat profile. 141 184 IPR000061 GO:0003723|GO:0006396
Lja3g4703 433 Pfam G-patch domain 351 394 IPR000467 GO:0003676
Lja3g4703 433 MobiDBLite consensus disorder prediction 23 140 - -
Lja3g4703 433 MobiDBLite consensus disorder prediction 56 75 - -
Lja3g4703 433 MobiDBLite consensus disorder prediction 209 234 - -
Lja3g4703 433 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 3 433 IPR040169 -
Lja3g4703 433 SUPERFAMILY Surp module (SWAP domain) 125 190 IPR035967 GO:0003723|GO:0006396
Lja3g4703 433 PANTHER SURP AND G PATCH DOMAIN-CONTAINING 1 3 433 - -
Lja3g4703 433 Gene3D Surp module 112 194 IPR035967 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4703 Lja-Chr3 89065441 89072503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4703 346 433 C2H2 Transcription Factor Family AT5G26610 33.981 2.89e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4703 K13096 - gmx:100786213 667.151