Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4689 ATGCCTTTACCACATCAAACATTCACCATGTCAGATCCTCAACCTAATTCTTATGATGAATGGTTCAACTTCATGCTCCACCACCCTCACTACTCTTCATCTTCTTCCTCTTCTTATTCTCCTCCTTCTCAATCCAACATATGGTCACCCTACCCCCCCATTTACTCCAACAACATGTTTGAAATTCCTTTATCTTCAGCCTCATCTTCCTCTGCAAGACCCCTTTCACCTCCTCTCAGAGAAGCCCTTCCACTCATCAACAAGTTGAGCCTCACAAACCAGCAAAACAATGAACTCTCAAACATTAACATTGGAATAGAAGTGGAAGAGGACAAACATGAAGATGATGATGAGGACGAAGAAGATGTAACTGTGAATTTTTCCCTACGCATAGGGCTTCCAAGGATGAGTACTTCTTCTGATCTGGGTTCAACTTCAAGGATGAGTTCCACTTCTCTAGAAATGGCCCAAAGAGAAGAAGTTAATATGATTTCTGAACAATCTTTGGAAAGATTGAACAAGGGCCAGTATTGGATTCCTACCCCTTCTCAGATACTCATTGGTCCTACACAGTTCGCATGTTCTGTGTGCTCTAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTAAAAGGAACACAGCCAACAGCTATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGACTTCAGAACTCTCCAAACACATTACAAGAGAAAGCATGGCATCAAACCCTACATGTGCAGAAAATGTGGCAAAGCTTTCGCAGTGAAAGGCGATTGGAGAACGCATGAGAAGAATTGCGGCAAAATATGGTATTGTTTATGCGGGTCTGATTTCAAACACAAAAGGTCTCTCAAGGACCACATCAAAGCCTTTGGCTATGGCCATGGAGCTCTTGGTGTTGATTGCTTGCAAGAAGAAGATGAAGCAGCTTCTGAAAATGAACATGATGAGGAAAGCTCATTGTGA 1062 0.4284 MPLPHQTFTMSDPQPNSYDEWFNFMLHHPHYSSSSSSSYSPPSQSNIWSPYPPIYSNNMFEIPLSSASSSSARPLSPPLREALPLINKLSLTNQQNNELSNINIGIEVEEDKHEDDDEDEEDVTVNFSLRIGLPRMSTSSDLGSTSRMSSTSLEMAQREEVNMISEQSLERLNKGQYWIPTPSQILIGPTQFACSVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGALGVDCLQEEDEAASENEHDEESSL* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4689 353 SMART c2h2final6 192 214 IPR013087 -
Lja3g4689 353 SMART c2h2final6 276 296 IPR013087 -
Lja3g4689 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 192 219 IPR013087 -
Lja3g4689 353 PANTHER ZINC FINGER PROTEIN WIP2 10 352 IPR043584 GO:0003700|GO:0010468
Lja3g4689 353 SUPERFAMILY beta-beta-alpha zinc fingers 260 296 IPR036236 -
Lja3g4689 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 276 296 IPR013087 -
Lja3g4689 353 Pfam Zinc finger, C2H2 type 192 211 IPR013087 -
Lja3g4689 353 Gene3D Classic Zinc Finger 191 214 - -
Lja3g4689 353 ProSitePatterns Zinc finger C2H2 type domain signature. 194 214 IPR013087 -
Lja3g4689 353 Gene3D Classic Zinc Finger 255 325 - -
Lja3g4689 353 SUPERFAMILY beta-beta-alpha zinc fingers 186 214 IPR036236 -
Lja3g4689 353 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 10 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4689 Lja-Chr3 88932235 88935304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4689 169 346 C2H2 Transcription Factor Family AT3G57670 85.955 7.74e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g4689 zf-C2H2_6 2.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4689 - - gmx:100794446 498.434