Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4687 ATGAATGATGGTAGACCAATGGGGGTGCATTACATGGATGGTGGTGGCTTTCCTTATGCTGTGAATGAAAACTTTGTGGATTTCTATCAAGGCCACAACCAAATGCCAGTGAATTATGCATTTTCTGGGTCAATGCCTGAGCAGGAAAGTGCCTACTGGTCAATGAACATGAATCCCTATAAATTTGGATTGTCTGGCCCTGGGAATACATCTTATTATAGTTCGTATGAGGTGAATGATCATTTGCCAAGAATGGAGATCAACAGGACTGATTGGGAATACCCTTCGGTAATGATCACCGAGGAACCAGCTACAACGGATTCGCCAACTAGAAGAGATGGAACCACAAGCATGCAGACTATCCCTGAAGAATGCAGTCCAAATCATCATGAGTCCAGTAGTAGCCAGGTCATATGGCAAGACGACATTGATCCTGATAATATGACTTATGAGGAACTACTGGACCTGGGAGAGGCAGTTGGAACTCAAAGCCGAGGTCTTTCCCAAGAACTTATTGATATGCTTCCAACCTCAAAGTACAAATTTAGTAGCTTATTCAAACGAAAAAATTCTGAGAAAAGGTGTGTAATTTGTCAGATGACATATAGAAGAGGTGACCAGCAAATGAAATTGCCATGCAACCATCTCTATCATGGTGAATGCATTACCAAATGGCTTAGCATTAACAAGAAATGTCCTGTCTGCAACATTGAGGTTTTCGGTGAGGACTCAACGCAGTAG 741 0.4224 MNDGRPMGVHYMDGGGFPYAVNENFVDFYQGHNQMPVNYAFSGSMPEQESAYWSMNMNPYKFGLSGPGNTSYYSSYEVNDHLPRMEINRTDWEYPSVMITEEPATTDSPTRRDGTTSMQTIPEECSPNHHESSSSQVIWQDDIDPDNMTYEELLDLGEAVGTQSRGLSQELIDMLPTSKYKFSSLFKRKNSEKRCVICQMTYRRGDQQMKLPCNHLYHGECITKWLSINKKCPVCNIEVFGEDSTQ* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4687 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 1 245 - -
Lja3g4687 246 Pfam Ring finger domain 194 236 IPR001841 -
Lja3g4687 246 SMART ring_2 195 235 IPR001841 -
Lja3g4687 246 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 245 IPR033276 GO:0004842|GO:0016567|GO:0046621
Lja3g4687 246 MobiDBLite consensus disorder prediction 103 136 - -
Lja3g4687 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 240 IPR013083 -
Lja3g4687 246 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Lja3g4687 246 SUPERFAMILY RING/U-box 194 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4687 Lja-Chr3 88893354 88899192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4687 3 246 C3H Transcription Factor Family AT3G63530 55.918 5.59e-101 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4687 K19045 - gmx:100785290 448.743