Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4684 ATGAAAACGCTAACTGTGAATACTGAAGATTCTTTTTCCAGTTTACTGGAACTTGCTTCTAACAATGATTTTGAAGGTTTTAAGGAGCTCTTATACAAGGATGCTTCGTCGATTAATGAGGTCGGGCTCTGGTATGTCCGGCAAAATGGGTCGAAACAAATTGTTCTTGAGCACAGGACTCCTTTGATGGTTGCTGCTACCTATGGTAGCATTGATGTTCTGAAGGTTATACTTTCGTGTCCAGAAGCAGATGTGAATTTTGCCTGTGGGGTGAATAAAAGCACTGCTCTTCACTGTGCTGCCTCCGGTGGGTCTGTTAAGGCAGTTGATGCGGTGAAGCTTCTTTTATCAGCCGGTGCTGATGTCAACTGCGTGGATGCGAATGGAAATCGAGCTGTTGATGTTATTGTTGTCCCTCCTAAGTTGCAGGGCATGAAAGCAATTCTTGAGGAACTCCTCTCGGACAGTGCTTCTGATGGCTCTGTTGGTGGCATCTCTGTTCCGGTGTCTGTGAATTCTTCTAGTCCTGGTTCACCTGTGCATTTCTTGTCACTTGAAAATGGGATGCCATGCTCTCCTTTGGGCTCACCGCGTTCTCCCGGGGCTGCAAAGTTAAATGATGCAGGTATCAGCACATTCTCGGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATAAAAAATAGCATATACACTACGGATGAGTTTCGGATGTTCTCATTCAAGGTTCGTCCTTGTTCACGAGCATACTCCCATGATTGGACTGAGTGTCCATTTGTTCATCCTGGAGAGAATGCTCGTAGGAGAGATCCCAGAAAATTCCACTACAGCTGTGTTCCATGCCCTGATTTTAGGAAAGGGGCTTGTAGACGTGGAGATATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCAGCTCAGTATCGGACACGCCTCTGTAAAGATGGCACTAGTTGCAACAGAAGGGTGTGTTTTTTTGCTCACACTGCAGAGGAGTTGCGTCCGCTGTATGTGTCCACTGGATCTGCTGTTCCTTCGCCACGATCATCTGCCTCTGCTGCTAGTGTCATGGACATGGCTGCCGCAATGAGCCTTTTGCCAGGTTCACCTTCGTCAATCTCTTCCATGTCTCCATCCCACTTCGGCCAGCCCATGTCCCCATCCGCAAGTGGCATCTCACTCTCATCTCCTTCTTGGGCACAACCTAATGTGCCGGCCCTTCATTTGCCCGGAAGCAATTTTCAATCTAGTCGCTTGAGGTCTTCTCTTAGTGCTCGTGACATTCCACCTGAAGACTTGAATATGTTGCCTGATTTTGATGGCCAGCAGCATGTTATGAATGATTTGAGCTGTTTCTTACAGCCCCGTTCTGGTGCTGTTTCTGCGAGTCGATCTTGTCGGTCTAAGATACTAACTCCATCAAATTTGGAAGATCTCTTTTCTGCTGAATTTTCTTCATCTCCCCGATATTCTGACCCAGCAATGGCTTCTGTTTTTTCCCCAACACACAGATCTGCTGTTATGAATCAGTTTCAACAGCTTCAAAGTACGCTGTCGCCTATAAATACCAACATGATGTCTCCTAAGAATGTTGAGCATCCTCTGTTACAGGCCTCATTTGGCGTTGCTTCTCCTGGGAGAATGTCACCTAGAAGTGTTGAACCGATCTCCCCAATGGGCGCTCGACTGTCGGCATTTCCTCAGCGTGAGAAACAACAGCAGCAACAGCTGCGGAGTATTAGTTCAAGAGAGCTTGGTGCCAACAACCCTGCCTCAGTTGTTGGCTCCCCTGCAAGCCCTTGGTCTAAGTGGGGATCTCCAAATGGGAAGGTTGATTGGTCTGTAAATGGAGATGACCTCGGTCATCAAATGCAAAGATCATCCTCATTTGAACTGAAAAATAATGGGGAAGAGCCTGATCTATCATGGGTCCAATCCCTGGTGAAGGAATCCCCACCTGAGATGATGATGAAAGAGAAGTTTGCATCCTCTGGCCCTGTTGCATCTGCTGAAGGACTGGATCCCAATTCCCAAATTGAATCCGTTGATCATTCTGTGTTAGGAGCTTGGCTTGAGCAAATGCAGCTGGATCACCTTGTAGTCTAA 2121 0.4691 MKTLTVNTEDSFSSLLELASNNDFEGFKELLYKDASSINEVGLWYVRQNGSKQIVLEHRTPLMVAATYGSIDVLKVILSCPEADVNFACGVNKSTALHCAASGGSVKAVDAVKLLLSAGADVNCVDANGNRAVDVIVVPPKLQGMKAILEELLSDSASDGSVGGISVPVSVNSSSPGSPVHFLSLENGMPCSPLGSPRSPGAAKLNDAGISTFSEKKEYPIDPSLPDIKNSIYTTDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAASVMDMAAAMSLLPGSPSSISSMSPSHFGQPMSPSASGISLSSPSWAQPNVPALHLPGSNFQSSRLRSSLSARDIPPEDLNMLPDFDGQQHVMNDLSCFLQPRSGAVSASRSCRSKILTPSNLEDLFSAEFSSSPRYSDPAMASVFSPTHRSAVMNQFQQLQSTLSPINTNMMSPKNVEHPLLQASFGVASPGRMSPRSVEPISPMGARLSAFPQREKQQQQQLRSISSRELGANNPASVVGSPASPWSKWGSPNGKVDWSVNGDDLGHQMQRSSSFELKNNGEEPDLSWVQSLVKESPPEMMMKEKFASSGPVASAEGLDPNSQIESVDHSVLGAWLEQMQLDHLVV* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4684 706 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Lja3g4684 706 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Lja3g4684 706 PANTHER UNKEMPT FAMILY MEMBER 1 704 IPR045234 -
Lja3g4684 706 Pfam Ankyrin repeats (3 copies) 19 126 IPR002110 GO:0005515
Lja3g4684 706 MobiDBLite consensus disorder prediction 572 608 - -
Lja3g4684 706 MobiDBLite consensus disorder prediction 572 613 - -
Lja3g4684 706 Gene3D - 277 340 - -
Lja3g4684 706 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 282 302 IPR000571 GO:0046872
Lja3g4684 706 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Lja3g4684 706 ProSiteProfiles Zinc finger C3H1-type profile. 282 304 IPR000571 GO:0046872
Lja3g4684 706 MobiDBLite consensus disorder prediction 379 399 - -
Lja3g4684 706 Gene3D - 2 188 IPR036770 -
Lja3g4684 706 SMART c3hfinal6 277 303 IPR000571 GO:0046872
Lja3g4684 706 SMART c3hfinal6 312 335 IPR000571 GO:0046872
Lja3g4684 706 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Lja3g4684 706 SUPERFAMILY Ankyrin repeat 10 137 IPR036770 -
Lja3g4684 706 SMART ANK_2a 57 87 IPR002110 GO:0005515
Lja3g4684 706 SMART ANK_2a 10 40 IPR002110 GO:0005515
Lja3g4684 706 SMART ANK_2a 92 124 IPR002110 GO:0005515
Lja3g4684 706 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 1 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4684 Lja-Chr3 88865538 88869332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4684 9 702 C2H2 Transcription Factor Family AT5G12850 54.661 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja3g4684 Ank_2 4.3e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4684 - - gmx:100791328 1122.07