Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4676 ATGGAGTCAGAAGTTAATATGTTACAATCTAAACGCTCAGCTCCTAACGGTATTTCTCCTCAGGGACGTAAAAGACTGAAATTATCTAGTGAAAGCTTTCCATACTCATCACATGATAAAGCCATACCAGAGGCACCAAATAACTCACCACATGTCGAAGACCCTCTAAAGTGCTTAGAAACTGGAAGATTTGGAAGTGTCACAAAGGACATCGAGGCCCTTATAACCCGAAAAATGCAAGTGCTGGGCCCTTTCTTTGCAAGATTTCCCAAACTTGTAACTCAAGAATTGAAAGTAGCAGTGGATCGCGATGAAGAAATTGATAAGTTGGAAAACAAAAAAGGTATCGTTATGTCACAAGAAAAGGTCATAGATTTGAAAGAAGAGCACATTAAAAAGGATGCTACTGCAGCACAGCATGTTGTGATTATTGATTCGGATGAGGAAGATGATAGAAATCCTGTTGTAATTATTGATTCGGATGAGGAAGATAATAGAGATAAAAAATCTTCTCTTCCATTTAATGAAGTAATGTTGCCGAAATCACTCCATTCTCCTGCATTGAAAATGATTGGGCATCCTGCTCCCATTGCTTACCATGGAGAAAGTGAAGATCTAAAATTTGAGGCAACTCTGGCTGCTAAAGATAACACTCAGAGAGATAAAGGTGTTTATGTTGGTGTACAGGAGAAAGAAGATCATGAGGTTGATAATGAAGATGATGGGCTAGAAGATATTTGGAGGGAAATGTCAATGGCAGTAGAATGTTCTAAAGATGTTTCTGTGAATCCTCCGCCTGAGGAAGAAGTTGAAAAAGATGCCGACTGTGATCATTCTTTTGTTTTGAAAGATGATCTTGGTTATGTTTGTCGCGTCTGTGGGGTCATTGACAGAGGAATTGAAACCATATTTGAGTTCCAGTACAAGGTTAAAAGGAGCACAAGAACTTACATGGCTGATTCCTGGAATGGTAAAGCAAAAACTGATGCATATGGAATTAAGATTGCTGAAGATGACATCACCTTATCTGAAATCTCAGCACATCCTAGGCATATGAAACAAATGAAGTCTCACCAAATTGAAGGATTCAATTTTCTGGTCAGAAACCTCGTAGGTGACAATCCCGGGGGGTGCATCTTGGCCCATGCTCCAGGATCTGGGAAGACATTCATGATAATCAGTTTCATGCAAAGTTTTCTTGGAAAGTACCCAAATGCTAGACCTCTAGTGGTGCTTCCCAAGGGTATTCTATCTACTTGGAAAAAGGAGTTTCAGACATGGCAAGTGGAGGACATACCACTTTATGATTTTTACTCTGCGAAGGCAGACAGTAGATCTCAGCAGTTGGAAGTTTTGAAACAATGGGTAGAACGGAAGAGCATCCTTTTCTTGGGGTACACGCAGTTCTCTTCAATAATGTGTGATACTAGTACTAGCACCTCATCGGTATCTTGCCAGGAAATATTACTTCAGCAACCTTCAATTCTCATTTTAGATGAAGGACATAATCCACGGAATGAAGATACCGATATAGTGCAGTCGCTTGCAAGGGTGCAGACGCCTAGAAAAGTCGTACTGTCAGGAACCTTGTATCAGAACCATGTGAAAGAGGTATTTAATATCTTGAACCTGGTACGGCCAAAGTTTATGAAGATGGAAAGATCAAGGCTCATTGAAAAGCGCATTCATAGCAGAGTAAATATATCTAGCAAGAAAAATTTCTTTGATTTGGTTGAGGATACTTTGCAGAAGGACCCAGATTTTACAAGGAAGATTTCTGTTATAAAAGATTTGCGTGAAATGACAAGCAAGGTGCTTCACTATTACAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTGGTTGATTATACTGTTCTTCTTAACCTTACCCCAAAGCAGAAGCATGAAAAGGAGAAATTAAAGAACACATCTGGATTTGGAAAGTTCAAGAAATCTTTTGTGGGAAGTGCGCTGTATCTTCACCCTAGATTGAAGCCTGTCGCGGAAAAAAAAAGTGGTGAAAACTGTGTATCTGATCAAATGGTGGATGATCTGATAGAGAAATTGGATGTGAAAGATGGGGTGAAGTCAAAATTCTTCCTGAACATTCTAAACTTGTGTGAATCATCTGGGGAGAAGCTTCTGGTGTTCAGCCAATATCTCTTACCAATGAGATTTTTAGAGAGGTTAGTTATGAAAAGGAAAGGTTGGAGTGTTGGGAAAGAAATCTTCGAAATCTCAGGGGATTCTAGCTCTGAGCAAAGGGAGTTGTCCATGTACAAATTCAACAATTCACCTGATGCCAAAGTCTTATTTGGCTCAATCAAGGCTTGTGGAGAGGGCATATCCTTGGTTGGGGCATCCCGAGTACTTGTTTTGGATGTTCATCTGAACCCATCAGTTACTCGTCAAGCTATTGGCCGTGCATTCCGACCAGGGCAGACAAAGAAGGTCTTTGTGTATCGATTGATAGCTGCTGATTCTCACGAAGAGGATGATCACCTGACTTGTTTCAAGAAGGAATCAATTTCTAAGATGTGGTTTGAATGGAATGAGTATTGTGGTGATCAAGCTTTCAAGGTTGAGAACGTCAGTGTGAAAGAATGTGGTGATCTGTTCCTTGAGAGTTCGATGTTAGGAGAAGACGTACAAGCTCTATATAAAAGTTAA 2670 0.4011 MESEVNMLQSKRSAPNGISPQGRKRLKLSSESFPYSSHDKAIPEAPNNSPHVEDPLKCLETGRFGSVTKDIEALITRKMQVLGPFFARFPKLVTQELKVAVDRDEEIDKLENKKGIVMSQEKVIDLKEEHIKKDATAAQHVVIIDSDEEDDRNPVVIIDSDEEDNRDKKSSLPFNEVMLPKSLHSPALKMIGHPAPIAYHGESEDLKFEATLAAKDNTQRDKGVYVGVQEKEDHEVDNEDDGLEDIWREMSMAVECSKDVSVNPPPEEEVEKDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMADSWNGKAKTDAYGIKIAEDDITLSEISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYSAKADSRSQQLEVLKQWVERKSILFLGYTQFSSIMCDTSTSTSSVSCQEILLQQPSILILDEGHNPRNEDTDIVQSLARVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFMKMERSRLIEKRIHSRVNISSKKNFFDLVEDTLQKDPDFTRKISVIKDLREMTSKVLHYYKGDFLDELPGLVDYTVLLNLTPKQKHEKEKLKNTSGFGKFKKSFVGSALYLHPRLKPVAEKKSGENCVSDQMVDDLIEKLDVKDGVKSKFFLNILNLCESSGEKLLVFSQYLLPMRFLERLVMKRKGWSVGKEIFEISGDSSSEQRELSMYKFNNSPDAKVLFGSIKACGEGISLVGASRVLVLDVHLNPSVTRQAIGRAFRPGQTKKVFVYRLIAADSHEEDDHLTCFKKESISKMWFEWNEYCGDQAFKVENVSVKECGDLFLESSMLGEDVQALYKS* 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4676 889 PANTHER PROTEIN CHROMATIN REMODELING 35 18 888 - -
Lja3g4676 889 CDD SF2_C_SNF 687 824 - -
Lja3g4676 889 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 18 888 IPR044567 GO:0080188
Lja3g4676 889 SMART ultradead3 351 561 IPR014001 -
Lja3g4676 889 Gene3D - 324 584 IPR038718 -
Lja3g4676 889 Pfam SNF2-related domain 375 636 IPR000330 GO:0005524|GO:0140658
Lja3g4676 889 Gene3D - 618 884 IPR027417 -
Lja3g4676 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 550 IPR027417 -
Lja3g4676 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 851 IPR027417 -
Lja3g4676 889 MobiDBLite consensus disorder prediction 1 36 - -
Lja3g4676 889 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 369 548 IPR014001 -
Lja3g4676 889 Pfam Helicase conserved C-terminal domain 701 812 IPR001650 -
Lja3g4676 889 MobiDBLite consensus disorder prediction 1 54 - -
Lja3g4676 889 SMART helicmild6 725 813 IPR001650 -
Lja3g4676 889 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 699 867 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4676 Lja-Chr3 88770289 88779184 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4676 710 831 RAD5 or RAD16-like Gene Family AT5G43530 38.525 1.06e-15 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja3g4676 SNF2_N 4.4e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4676 K10875 - gmx:100780454 1250.34