Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4669 ATGGTGAAGGAAAGTGCCTACTATGATGTATTAGGGGTCAATGTTGATGCATCTGCTGCAGATATCAAGAAGGCTTATTACATCAAGGCAAGAATAGTTCACCCTGATAAAAATCCTGGGGATCCTAAGGCTGCTGAAAATTTTCAGATGCTTGGTGAGGCTTACCAGGTTTTAAGTGACCCTGAGAAGCGCGAAGCATATGATAAGAATGGGAAGGCAGGAATACCACAAGATACCATGTTGGATCCTACGGCTGTATTTGGGATGCTTTTTGGAAGTGAACTGTTTGAAGAATATATTGGACAACTTGCACTGGCTTCTTTAGCATCTATAGAAGTTGAGGAAGACTCCCAAGCCCCTGAAGTTCACAGGCAGAGAATTCATGAAAAGATGAAGGCATGGCAGAAGGAAAGGGAGCAGAAGCTGATATCAATTCTGAAAGATCGTCTGCAACCATTTGTTGATGGTCGTGTAGATGAATTTACAGCATGGGCAAATTCAGAAGCGCGTCATCTTTCAACAGCTGCTTTTGGAGAGGCCATGTTGCATACAATTGGCTACATCTACACACGAAAAGCTTCAAGAGAACTTGGAAGGGATATACGGTTTATGAATGTTCCCTTTTTAGCTGAGTGGGTACGAGACAAAGGTCATCGTATGAAGTCTCAAGTGATGGCAGCTTCAGGAGCTGTGTCCCTAATTCAAATACAAGAAGATCTCAAGAAAATAAACCAAGGAGAAAGCAAAGAAGAAGACTTGGTGAAAGCTGTTGAAGACAAGAAGGATACCATGGTTAATTCCCTATGGAAGATCAACGTAATTGATATTGAATCAACTCTCTCACATGTTTGCCAAGCAGTTCTTAGAGATCCTAGTGCTTCCAAAGATGTTGTGAGGTCTCGAGCCAAAGCATTGAAGAAGTTAGGAGCTGTCTTTCAAGGTGCTAAGGCTGTTTACAGCAGAGAAAACAGTCTACGCCGAGAAAGTGATGATAAACTGGGAGATGCTGCTTCCTCTTCATAG 1023 0.4242 MVKESAYYDVLGVNVDASAADIKKAYYIKARIVHPDKNPGDPKAAENFQMLGEAYQVLSDPEKREAYDKNGKAGIPQDTMLDPTAVFGMLFGSELFEEYIGQLALASLASIEVEEDSQAPEVHRQRIHEKMKAWQKEREQKLISILKDRLQPFVDGRVDEFTAWANSEARHLSTAAFGEAMLHTIGYIYTRKASRELGRDIRFMNVPFLAEWVRDKGHRMKSQVMAASGAVSLIQIQEDLKKINQGESKEEDLVKAVEDKKDTMVNSLWKINVIDIESTLSHVCQAVLRDPSASKDVVRSRAKALKKLGAVFQGAKAVYSRENSLRRESDDKLGDAASSS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4669 340 SMART dnaj_3 5 63 IPR001623 -
Lja3g4669 340 Gene3D DnaJ domain 1 84 IPR036869 -
Lja3g4669 340 SUPERFAMILY Chaperone J-domain 2 99 IPR036869 -
Lja3g4669 340 PANTHER BNAA01G05380D PROTEIN 1 337 - -
Lja3g4669 340 CDD DnaJ 7 60 IPR001623 -
Lja3g4669 340 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 337 - -
Lja3g4669 340 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Lja3g4669 340 PRINTS DnaJ domain signature 63 82 IPR001623 -
Lja3g4669 340 PRINTS DnaJ domain signature 43 63 IPR001623 -
Lja3g4669 340 PRINTS DnaJ domain signature 8 26 IPR001623 -
Lja3g4669 340 PRINTS DnaJ domain signature 26 41 IPR001623 -
Lja3g4669 340 Pfam DnaJ domain 7 68 IPR001623 -
Lja3g4669 340 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Lja3g4669 340 Pfam X-domain of DnaJ-containing 135 322 IPR026894 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4669 Lja-Chr3 88717795 88721618 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4669 7 69 Miscellaneous Gene Families AT1G16680 49.231 1.23e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4669 - - gmx:100787075 556.984