Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4656 ATGAGTTTGAGACTTCTCCAAAAACCCTTCAAAACCCACAACAGTACTGTGCACTTGCAAGATATAGAAAGTGACAGAGACATGTTGGACTATGAGTGGGGAAACCCATCATCCATAATGCTCACCGGTGGAAATGAAGACGGCGGCGGCACCACCGCTGTCTCCGATCAAGCCCACCGACAAATGTTCGACCACTACGCCTCTCACACCCTTCTCACCGACCACTTCCTCCACGGGCCTGGCCCCACAAACACACCTGATTTCACTCACCAGAACCACCACCTCCAGTTCAACTCATCACAAGCCCAAGCCCAGCACCACCATGTCTCTCACTCTCACACCTTCTTCGACCCACGCGCCTTCCACGGCGGCGCGTCCTCCACCTCCTATCCTCCGCCTCAGCCACCCCCTATGCTCTCCCTTGACCCTCTTCCGCCTCACGCTGGACATGGACCGGGGTACGTCCTCATGCCGAAGTCTGAGGACGTCGGCCGGCCCATAGACTTCGTGGGGTCGCGAATTGGGCTCAATCTCGGCGGCCGGACTTACTTCTCGTCGTCTGAGGATGACCTTGTAAGCCGCCTCTACCGCCGGTCTAGACCGGGCGAACCTGGCTCGACCATGTCTTCCAACAACTCGCCCAGGTGCCAGGCTGAGGGATGCAATGCTGATCTGTCTCAGGCCAAGCACTACCACCGCCGCCACAAGGTTTGCGAGTTTCACTCCAAGGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGTCAACAATGCAGCAGGTTTCATCTACTTTCTGAGTTTGATAATGGAAAACGTAGCTGCAGGAAGAGACTAGCTGATCACAATCGTCGCAGAAGAAAAACTCAGCAGTCAACTCAAGAAATTCAGAAATCTACTACTGCTCTGGATAACATTGCAAGGTCCCCTGCTGACTCCGGAACTCAACCATCATCATCGGTGACTGTGGCAGTGTCACCGCCGGATTATTTTCGGCCGAGGCCATATAACCAAAGCACAAGCCCTTCAAATTCAAGCTCACTGTTTTTCTCAAGCGGGTAG 1065 0.5484 MSLRLLQKPFKTHNSTVHLQDIESDRDMLDYEWGNPSSIMLTGGNEDGGGTTAVSDQAHRQMFDHYASHTLLTDHFLHGPGPTNTPDFTHQNHHLQFNSSQAQAQHHHVSHSHTFFDPRAFHGGASSTSYPPPQPPPMLSLDPLPPHAGHGPGYVLMPKSEDVGRPIDFVGSRIGLNLGGRTYFSSSEDDLVSRLYRRSRPGEPGSTMSSNNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQSTQEIQKSTTALDNIARSPADSGTQPSSSVTVAVSPPDYFRPRPYNQSTSPSNSSSLFFSSG* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4656 354 MobiDBLite consensus disorder prediction 129 143 - -
Lja3g4656 354 Pfam SBP domain 216 289 IPR004333 GO:0003677
Lja3g4656 354 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 113 330 - -
Lja3g4656 354 ProSiteProfiles Zinc finger SBP-type profile. 213 290 IPR004333 GO:0003677
Lja3g4656 354 MobiDBLite consensus disorder prediction 334 354 - -
Lja3g4656 354 Gene3D - 206 277 IPR036893 GO:0003677|GO:0005634
Lja3g4656 354 MobiDBLite consensus disorder prediction 282 354 - -
Lja3g4656 354 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 113 330 IPR044817 GO:0003677
Lja3g4656 354 MobiDBLite consensus disorder prediction 197 216 - -
Lja3g4656 354 SUPERFAMILY SBT domain 214 294 IPR036893 GO:0003677|GO:0005634
Lja3g4656 354 MobiDBLite consensus disorder prediction 294 326 - -
Lja3g4656 354 MobiDBLite consensus disorder prediction 105 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4656 Lja-Chr3 88630824 88633567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4656 28 263 SBP-box Gene Family AT1G02065 50.813 2.47e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja3g4656 SBP 5.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4656 - - lja:Lj3g3v0499510.1 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4656 3 88630824 88633567 Lja3g4656 3 88630824 88633567 ECH