Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4651 ATGGGAAAACGCATCAATATGGGAAATGGTGCTGAAAGCAACTTCTCTGCCCCATCCACCACTTCCAGCACCATCATTACTGAGACCAAAACTTCTAGCACACACTCTTCTTCCTCCTCCTCCTCAACAATAACATCACCAACATCATCATCAAATTCAGATTCACTGAACAATTCAACCACATCTCAAAACATGAAAACTGGGAAGGGCTCAAAGGAGTGCAAGAAGAGACAGAGAAGTGATGAGAGTGAAAGCAATAGCAATATCAATAGCAAGCACCCTACATACAGAGGAGTGAGGATGAGAAACTGGGGCAAATGGGTATGTGAGATTCGTGAGCCTAGAAAGAAATCAAGAATATGGCTTGGAACATACCCAACAGCAGAAATGGCAGCTAGAGCTCATGATGTAGCTGCCATAGCCATCAAAGGCGAATCAGCATTCCTGAATTTCCCTGAGTTGGCTCAAGAGCTTCCAAGGCCAGCAACCACTTCTCCAAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAAACACTGACTATAAGCATTGTGAAGATGGATCAGAACCAAGCCAGAGAGAAGAGCAAACATCTATATCTTCAACTCTTTCCATGGAAAATTGTAATACTAGAGAAGATCAAGCATCAATAGTATCAATATCTCAAGAGTCTTCAAATTCTCCTTCTGCCAATGATGATGCTGCGTTCTTTGACCTGCCAGATCTTTTTTCTGATGGAAACCATGGACTTTGCTCCTACTCTTCTTCTTGGCAGTTATGTGCAGTTAACAGTGGACTATTCCGGCTTGAGGAATCAGTTTTTTGGGAGAACTACTAG 837 0.4301 MGKRINMGNGAESNFSAPSTTSSTIITETKTSSTHSSSSSSSTITSPTSSSNSDSLNNSTTSQNMKTGKGSKECKKRQRSDESESNSNINSKHPTYRGVRMRNWGKWVCEIREPRKKSRIWLGTYPTAEMAARAHDVAAIAIKGESAFLNFPELAQELPRPATTSPKDIQAAAAKAANTDYKHCEDGSEPSQREEQTSISSTLSMENCNTREDQASIVSISQESSNSPSANDDAAFFDLPDLFSDGNHGLCSYSSSWQLCAVNSGLFRLEESVFWENY* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4651 278 MobiDBLite consensus disorder prediction 69 83 - -
Lja3g4651 278 SMART rav1_2 95 158 IPR001471 GO:0003700|GO:0006355
Lja3g4651 278 MobiDBLite consensus disorder prediction 9 68 - -
Lja3g4651 278 MobiDBLite consensus disorder prediction 159 205 - -
Lja3g4651 278 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 278 - -
Lja3g4651 278 MobiDBLite consensus disorder prediction 1 95 - -
Lja3g4651 278 Gene3D AP2/ERF domain 95 153 IPR036955 GO:0003700|GO:0006355
Lja3g4651 278 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
Lja3g4651 278 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Lja3g4651 278 CDD AP2 96 154 IPR001471 GO:0003700|GO:0006355
Lja3g4651 278 ProSiteProfiles AP2/ERF domain profile. 95 152 IPR001471 GO:0003700|GO:0006355
Lja3g4651 278 SUPERFAMILY DNA-binding domain 95 153 IPR016177 GO:0003677
Lja3g4651 278 Pfam AP2 domain 94 144 IPR001471 GO:0003700|GO:0006355
Lja3g4651 278 PANTHER ETHYLENE RESPONSE FACTOR 25 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4651 Lja-Chr3 88575943 88576986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4651 87 274 AP2-EREBP Transcription Factor Family AT2G44940 53.922 1.64e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja3g4651 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4651 - - lja:Lj3g3v0509780.1 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4651 3 88575943 88576986 Lja3g4651 3 88575943 88576986 ECH