Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4650 ATGTTTGGGCGGGCACCAAGGAAGAGTGATAACACCAAATTTTATGAAGTTCTTGGTGTTCCAAAGAGTGCCAGTGAAGATGAAATCAAGAAAGCGTATAGAAAGGCAGCGATGAAGAACCATCCAGATAAGGGTGGAGATCCTGAGAAGTTCAAGGAGTTAGGTCAAGCCTATGAAGTTTTGAGTGATCCTGAAAAGAAAGAATTGTATGACCAATATGGTGAAGACGCCCTTAAAGAAGGCATGGGGGGAGGAGAATCGTTCCATAATCCATTTGATATATTTGAGACATTTTTTGGTGGAGCAGGGTTTGGTGGAGGTGGAAGTTCACGAGGTAGAAGACAGAGGCAGGGAGAAGATGTGGTGCATAGTATAAAGGTTTCCTTGGAGGATGTGTATAATGGCACAACAAAGAAACTATCTCTTTCTAGAAATGTATTATGCCTGAAATGTAAAGGGAAAGGTTCAAAAAGTGGAACAGCTGGTAGGTGTTTTGGTTGCCAAGGAACAGGTATGAAGGTTATAAGAAGGCAGATTGGACTGGGCATGGTTCAACAAATGCAACACGTCTGTTCTGACTGCAGGGGGACTGGTGAGGTCATTAGTGAGAGAGATAGATGCCCTCAGTGCAAGGGGAACAAGATTTCCCAGGAAAAGAAGGTGCTGGAGGTGCATGTTGAGAAGGGGATGCGGCAGGGTCAGAAGATTGTATTCGAAGGACAAGCTGATGAAGCTCCTGACACAATCACAGGAGACATAGTTTTTGTTGTACAAGTAAAGGAACACCCAAAGTTCAAGAGGGAGCTTGATGACCTTTATATTGATCACAATCTGAGCTTAACTGAAGCTCTTTGTGGCTTCCAGTTTGCCGTCAAACATCTTGATGGGAGACAATTGTTGATTAAATCAAACCCTGGGGAAGTCATCAAGCCAGGTCAACACAAAGCGATAAACGATGAGGGAATGCCACAACACGGCAGGCCCTTCATTAAGGGACGACTTTACATCAAGTTTAATGTTGATTTCCCAGACTCTGGTTTTATTTCCCCTGATCAATGCCAGTTATTAGAAAAGATATTACCTCAAAAGAGCAGCAAGAAGGCAGATATGGAGCTGGATGATTGTGAGGAGACCATTTTGCATGATGTCAACAATTTGGAGGAGGAGATGCGTCGAAGGAAGCAGCAACGGAGCCGTGAGGCATATGATGAAGATGAGGATGATGATGAGCCATCGACGCAACGAGTACAATGTGCTCAACAGTAG 1266 0.4408 MFGRAPRKSDNTKFYEVLGVPKSASEDEIKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKKELYDQYGEDALKEGMGGGESFHNPFDIFETFFGGAGFGGGGSSRGRRQRQGEDVVHSIKVSLEDVYNGTTKKLSLSRNVLCLKCKGKGSKSGTAGRCFGCQGTGMKVIRRQIGLGMVQQMQHVCSDCRGTGEVISERDRCPQCKGNKISQEKKVLEVHVEKGMRQGQKIVFEGQADEAPDTITGDIVFVVQVKEHPKFKRELDDLYIDHNLSLTEALCGFQFAVKHLDGRQLLIKSNPGEVIKPGQHKAINDEGMPQHGRPFIKGRLYIKFNVDFPDSGFISPDQCQLLEKILPQKSSKKADMELDDCEETILHDVNNLEEEMRRRKQQRSREAYDEDEDDDEPSTQRVQCAQQ* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4650 421 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 345 IPR008971 GO:0006457|GO:0051082
Lja3g4650 421 Hamap Chaperone protein DnaJ [dnaJ]. 10 386 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lja3g4650 421 CDD DnaJ 14 63 IPR001623 -
Lja3g4650 421 SMART dnaj_3 12 66 IPR001623 -
Lja3g4650 421 Gene3D - 148 214 - -
Lja3g4650 421 Gene3D - 263 344 - -
Lja3g4650 421 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Lja3g4650 421 CDD DnaJ_C 119 345 - -
Lja3g4650 421 PANTHER CHAPERONE PROTEIN DNAJ A6 7 421 - -
Lja3g4650 421 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
Lja3g4650 421 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Lja3g4650 421 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Lja3g4650 421 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 7 421 IPR044713 GO:0006457|GO:0030544
Lja3g4650 421 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 216 IPR036410 -
Lja3g4650 421 Pfam DnaJ domain 14 71 IPR001623 -
Lja3g4650 421 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Lja3g4650 421 Pfam DnaJ C terminal domain 122 343 IPR002939 -
Lja3g4650 421 MobiDBLite consensus disorder prediction 388 421 - -
Lja3g4650 421 PRINTS DnaJ domain signature 15 33 IPR001623 -
Lja3g4650 421 PRINTS DnaJ domain signature 46 66 IPR001623 -
Lja3g4650 421 PRINTS DnaJ domain signature 66 85 IPR001623 -
Lja3g4650 421 SUPERFAMILY Chaperone J-domain 9 109 IPR036869 -
Lja3g4650 421 Gene3D - 110 262 - -
Lja3g4650 421 Gene3D DnaJ domain 10 109 IPR036869 -
Lja3g4650 421 SUPERFAMILY HSP40/DnaJ peptide-binding domain 114 273 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4650 Lja-Chr3 88565552 88569103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4650 15 73 C2H2 Transcription Factor Family AT1G74250 47.059 1.12e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4650 K09503 - gmx:100800590 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4650 3 88565552 88569103 Lja3g4650 3 88565552 88569103 ECH