Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4641 ATGCATGGGAAGAAAGACCAAGAGCATATAAGGAAAGGGCCATGGAAAGCAGAAGAAGATGAAGTGCTGCTCAACCATGTCAAGAGGTATGGTCCAAGAGATTGGAGCTCCATTCGATCCAAAGGCCTTCTTCAAAGAACTGGCAAATCGTGCCGTCTTCGCTGGGTCAACAAGCTTCGACCCAACCTCAAGAATGGGTGCAAGTTTTCACTTGAGGAAGAGAGGGTGGTGATAGAGTTGCAGGCACAAATTGGGAACAAGTGGGCTAAGATTGCGTCCTATTTGCCAGGGAGAACAGACAATGATGTGAAGAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCTAGGCTTCTGCAGACATCAGCAACAACCTCCAAATCGCAGAAGAATAAAACTAAAGTTCCCACCATGCTTCATGTTCCAAATTTGGAGGCTCCTAAGTTCAGTTCTTCATCAGAGGGAGAACCATCATCAAAGCCTCAGTCATGTTCATTTTCTTTCATTGACAATTCTGAAGTTATCAAAATGATTCCACTACCAGATCTTATTCTAAAGTCCAATCAGCCTTTAAGTTCTGAGACAAGCCATGTTAAGCAAGAGTTCACCCCTTTTGATGAGAGTTGTTACAAAAGCACTGAACAAATCACCTTCCCCCAAATTTCAGAACTCCAAACTGATCTCACATTCTCAATGGGAAGCCAAGATCTCTTAACCAGAATTGATGAGCCAAATTTTGGTGATGTGTTTGGCACTCTGGACTCATCTGAATTTGGATTGGGTCTTCAACACCCCATTGGGTTCCCTTTCTTTGATCCATCAGGAAGTTGCAGAATTGGGACAACAAGGGATACAATTGATCATAACTCCAAAAACAGTGGTAGCTTCTTTGATGATTTCCCAGAAGACATGTTTGATCACATGGAAGCACCTGCAAGCCCATAA 942 0.4331 MHGKKDQEHIRKGPWKAEEDEVLLNHVKRYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIELQAQIGNKWAKIASYLPGRTDNDVKNFWSSRQKRLARLLQTSATTSKSQKNKTKVPTMLHVPNLEAPKFSSSSEGEPSSKPQSCSFSFIDNSEVIKMIPLPDLILKSNQPLSSETSHVKQEFTPFDESCYKSTEQITFPQISELQTDLTFSMGSQDLLTRIDEPNFGDVFGTLDSSEFGLGLQHPIGFPFFDPSGSCRIGTTRDTIDHNSKNSGSFFDDFPEDMFDHMEAPASP* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4641 313 PANTHER TRANSCRIPTION FACTOR DUO1 3 313 - -
Lja3g4641 313 Pfam Myb-like DNA-binding domain 15 74 - -
Lja3g4641 313 Gene3D - 4 65 - -
Lja3g4641 313 PANTHER TRANSCRIPTION FACTOR DUO1 3 313 - -
Lja3g4641 313 MobiDBLite consensus disorder prediction 120 139 - -
Lja3g4641 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Lja3g4641 313 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Lja3g4641 313 SMART sant 11 61 IPR001005 -
Lja3g4641 313 SMART sant 65 113 IPR001005 -
Lja3g4641 313 Gene3D - 67 137 - -
Lja3g4641 313 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Lja3g4641 313 MobiDBLite consensus disorder prediction 120 135 - -
Lja3g4641 313 CDD SANT 68 107 IPR001005 -
Lja3g4641 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
Lja3g4641 313 CDD SANT 14 59 IPR001005 -
Lja3g4641 313 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4641 Lja-Chr3 88438555 88440370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4641 1 313 MYB Transcription Factor Family AT3G60460 50.932 9.13e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g4641 Myb_DNA-bind_6 1.2e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4641 3 88438555 88440370 Lja3g4641 3 88438555 88440370 ECH