Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4633 ATGAAAACGATGCTGTTCATTCGCCATTTTTGTAGCAGCACAACCTCAAACCTATCGAAAAAACCTTCGAGGTACAAAAAGGTTGTCCTGGTACAAGCCCAACAAGCCATCACTGACTACCTCCACTCCACAAGGTCCATCCCTTATGCTCACGCTGACCAGATTGCCAAGAACTCCCTTCTCACCCTCACCAATCTCATCTCCAAGTTGGGTTCCTTCACCCCTTCAAGCTTCCCCAAGACCCTCGACAAGTTCCTCAGGTACAACCCCATTAACGAGTATGAGCTTTTCTTTGAGAGTATTGGGATTCATCATGCCCAACTACCTGCATTGTTGCCCAATGATAAGTTCTTCTTTTCTGAAGATGGGTCGTTTCTGGATGCTGCTTGTGCACTTTATGAATTTGGGTTTCCTTGGGATAAGCTTGGTTTGTTGTATATGGAGAGTAGCTCTGTGTTTAAGAGGAGTGGTTCTGAGTTGAAGGGTAGGCTTTGTGGGTTGAAAATGCAGGGTTTTACCAATGTTCAGGTTGTTGGGATATGTTTGGCTTTCCCTTTTGTTTTCTGTGAGCAGGAGGGAGGCGAGTTCGGTGGTCGGATTGATGGGTTATTGAATGATCTGAAGTTGGTTTTTTTGGATTTTGACTTGGCTGGTTCTGTTGAGGGGAATGCAGGTACTTGGTATGAGGTGTGCAGGAAAATCAAGATGTTTTATGATTTGAGTAAAGGTAACGAGGGCGAGATAGGGGAGCTCATTGGAAGAAATAAAGGTGTCATTGTTGAGCATGGAGAAGAGGTTTTGCTCCAAAAAGCAGAATATTTTTGTAGATTTGGTATCAAGAAGGAGGAGGTAGCGCGGTTGATTCTGCAGGGCTCAGAGTTGTTGAAACTTGATTTGGAAACGCCGGTGATCAATGTGTTGAAGCTATTGAAACACTTTGGAATGAGCTCCAAGGATATTGAGGATGTCAAGGGGAATTATGCTCATGTGTTGGGAACAAGCAAAATGGCTTATCTTCCTAATGTCATGAGGGCTTTGGGTTTACATGAGTGGTTCTTTAATAAAATCAAGGATGGTAATCATCACCTGCTAGTGAGTTATGTCACAAGCTATCCCAATGAAAGCCATGATAAAGCTTATCAAAGTGGTTTAAAGACAATTAAGGTTTCAAGAACCCCAACTCACAACATGAGTAAATTAAATTTCTTGCATGCCATGGGGTTTGGGGAAAATGCTCTGACCTTGAAAATCTTTACTAACTTGCATGGACCAAGTTGTGAATTGCAAAAAAGATTTGACTGCTATCTACGTTCAGGGGTTGAGTTCTCAAAGCTCTGCAAGCAAATCAGAATCCAACCAAAGATTCTAAGCCAAAACCCTGAAAATATAGAGAACAAGATCAATTTCCTTTGTCAGGAAATGGGATACTCTGTGGAGCTTTTGGACAGTTTTCCAGCATTCTTATGTTTTAACTTAGAGAACCGCATTAAGCCTAGGTACAGATTCTATATGTGGGTTATGGAAAAGGGTCTTTTGACCAAAAACTATTCCATTGCGACCATGATTGCTACCAGTAATAAGGATTTTGTGGGTCGCATTTTTAAAATTCACCCAGCCGCTCCAAAACATTGGTTTGAGCAATTCTATCCCAGAAAATTGCTCGGATGA 1668 0.4197 MKTMLFIRHFCSSTTSNLSKKPSRYKKVVLVQAQQAITDYLHSTRSIPYAHADQIAKNSLLTLTNLISKLGSFTPSSFPKTLDKFLRYNPINEYELFFESIGIHHAQLPALLPNDKFFFSEDGSFLDAACALYEFGFPWDKLGLLYMESSSVFKRSGSELKGRLCGLKMQGFTNVQVVGICLAFPFVFCEQEGGEFGGRIDGLLNDLKLVFLDFDLAGSVEGNAGTWYEVCRKIKMFYDLSKGNEGEIGELIGRNKGVIVEHGEEVLLQKAEYFCRFGIKKEEVARLILQGSELLKLDLETPVINVLKLLKHFGMSSKDIEDVKGNYAHVLGTSKMAYLPNVMRALGLHEWFFNKIKDGNHHLLVSYVTSYPNESHDKAYQSGLKTIKVSRTPTHNMSKLNFLHAMGFGENALTLKIFTNLHGPSCELQKRFDCYLRSGVEFSKLCKQIRIQPKILSQNPENIENKINFLCQEMGYSVELLDSFPAFLCFNLENRIKPRYRFYMWVMEKGLLTKNYSIATMIATSNKDFVGRIFKIHPAAPKHWFEQFYPRKLLG* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4633 555 SMART mt_12 249 280 IPR003690 GO:0003690|GO:0006355
Lja3g4633 555 SMART mt_12 285 316 IPR003690 GO:0003690|GO:0006355
Lja3g4633 555 SMART mt_12 446 477 IPR003690 GO:0003690|GO:0006355
Lja3g4633 555 SMART mt_12 478 510 IPR003690 GO:0003690|GO:0006355
Lja3g4633 555 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF18, MITOCHONDRIAL 14 548 - -
Lja3g4633 555 Pfam mTERF 245 334 IPR003690 GO:0003690|GO:0006355
Lja3g4633 555 Pfam mTERF 428 529 IPR003690 GO:0003690|GO:0006355
Lja3g4633 555 Gene3D Transcription termination factor 3, mitochondrial 272 548 IPR038538 -
Lja3g4633 555 PANTHER CGI-12 PROTEIN-RELATED 14 548 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4633 Lja-Chr3 88385807 88390785 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja3g4633 mTERF 1.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4633 - - lja:Lj3g3v0514080.1 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4633 3 88385807 88390785 Lja3g4633 3 88385807 88390785 ECH