Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4632 ATGGCTGGGAAAGATGATGATGGGTTGAGCTTAGGTTTGAGCTTGAGTTTAGGAAGTGGAAAAAATGCTGCAAATAATAATGATAAAAATAATCAAACCCTTTTTCCCATGCACAAGCCTCCTCAATCCACCTCAAATCAAAGGGCTTCCTTCAATAACTTGTTCCCTTTTCATGATCGGAGCTCCGAGATGAGGTTGTTCCTCCGCGGAATAGACTCGAACTCACAACGGCCGTCGACGACCGTGGCGGTGCCGGCGGTGGCATGCGATGACGAGAACGGCGTTTCATCACCGAACAGTACGGTGTCGAGTATCAGCGGGAAGCGGAGCGAGAGAGAGGGCAACGGAGACGAGCACGAGGCCGCTGAGAGGGCGTCGTGTTCTCGGGGAAGCGAGGACGATGATGGCGGAGGCGGTGACGGCGATGGTGACACTTCAAGGAAGAAGCTGAGGTTGTCGAAGGAGCAGGCTTTGGTGCTGGAAGAAACCTTCAAGGAACATAACACCCTAAATCCAAAACAAAAGCAAGAATTGGCAAAGCAATTGAACCTGATGCCTAGACAGGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAATACTTGAAGAGATGCTGTGAGAATCTAACTGAGGAGAATAGGAGGTTGCAAAAAGAAGTGCAAGAGCTTAGAGCTCTGAAATTATCCCCACAGCTCTACATGCAAATGAATCCTCCCACCACTCTTACCATGTGCCCTTCGTGTGAGCGTGTTGCTGTCTCATCTGCATCCTCATCCTCATCACCCACCGTTCCCTCTGCCCCGGCTCCCGCTAATCGCAACCCCTTAGGCTCAAGCATCCAGCGACCGGTACCTATCAACCCTTGGGCTGCAATGTCTATCCAACAACACCGTCCTCGACCATAA 936 0.5075 MAGKDDDGLSLGLSLSLGSGKNAANNNDKNNQTLFPMHKPPQSTSNQRASFNNLFPFHDRSSEMRLFLRGIDSNSQRPSTTVAVPAVACDDENGVSSPNSTVSSISGKRSEREGNGDEHEAAERASCSRGSEDDDGGGGDGDGDTSRKKLRLSKEQALVLEETFKEHNTLNPKQKQELAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMQMNPPTTLTMCPSCERVAVSSASSSSSPTVPSAPAPANRNPLGSSIQRPVPINPWAAMSIQQHRPRP* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4632 311 Gene3D - 138 207 - -
Lja3g4632 311 ProSitePatterns 'Homeobox' domain signature. 178 201 IPR017970 GO:0000981|GO:0006355
Lja3g4632 311 Pfam Homeobox associated leucine zipper 203 237 IPR003106 GO:0006355|GO:0043565
Lja3g4632 311 PANTHER - 9 304 - -
Lja3g4632 311 Pfam HD-ZIP protein N terminus 2 113 IPR006712 GO:0005634
Lja3g4632 311 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 9 304 - -
Lja3g4632 311 MobiDBLite consensus disorder prediction 88 149 - -
Lja3g4632 311 ProSiteProfiles 'Homeobox' domain profile. 143 203 IPR001356 GO:0003677
Lja3g4632 311 Pfam Homeodomain 147 201 IPR001356 GO:0003677
Lja3g4632 311 SMART HOX_1 145 207 IPR001356 GO:0003677
Lja3g4632 311 MobiDBLite consensus disorder prediction 15 49 - -
Lja3g4632 311 MobiDBLite consensus disorder prediction 266 311 - -
Lja3g4632 311 MobiDBLite consensus disorder prediction 266 291 - -
Lja3g4632 311 Coils Coil 209 239 - -
Lja3g4632 311 MobiDBLite consensus disorder prediction 1 49 - -
Lja3g4632 311 MobiDBLite consensus disorder prediction 110 149 - -
Lja3g4632 311 SMART halz 203 246 IPR003106 GO:0006355|GO:0043565
Lja3g4632 311 CDD homeodomain 147 204 IPR001356 GO:0003677
Lja3g4632 311 MobiDBLite consensus disorder prediction 93 109 - -
Lja3g4632 311 SUPERFAMILY Homeodomain-like 130 204 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4632 Lja-Chr3 88380385 88383177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4632 41 309 Homeobox Transcription Factor Family AT3G60390 64.413 1.15e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja3g4632 HD-ZIP_N 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4632 K09338 - gmx:100798480 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4632 3 88380385 88383177 Lja3g4632 3 88380385 88383177 ECH