Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4616 ATGTCTTGTGATTTTTCTTCACTGGAATCCATTCAACACTTTCTGTTGCTTGAACATGATTCAAACAACGAAACCTGCTATTCACCCTCTGACAATCCATTTCCAATCCAAGATTTCGACTCTAGTGATGGATCTTCGCAGGATACCAATAACTCTAGTCCATCAGGGTGCAAAAAGGGTTCCTCTGCAGAGGCGCGTTCATCACACGCGCCGCCAGCTGAATGGAAGCGGTTCAGGGGCGTGAGGCGTAGGCCGTGGGGAAAGTTCGCGGCGGAGATAAGAGATCCAAAGAAGAACGGTGCTAGGGTTTGGCTTGGAACTTATGAGACTGAAGAGGAAGCGGGTCTAGCTTATGATAGAGCTGCTTTCAAGATTCGTGGCAGAAAAGCCAAGCTCAACTTTCCACATCTCATCGGCTCCGACACGCAGCCGGAGACGGCGAGTGTGGTGGAAGCTTTCAAGCAGAACTCGCCAGAGCCTCTTTCACCGGCTTCTTCGGAGGATGGTTTGGAGTATTCACCAGGGTCAAAGAAGAGGAAGAACTTAGTTGGTGTGTTGAATAGGTTAGCCAAACATAGAAGCCAAGTGCAGGTGTTTGATATGGGTTCAAGTGCAAATGATGTCATGAATGTTGATCAATGGTGGGATAATCAGTCCAACTGGTGCTCATAA 672 0.4821 MSCDFSSLESIQHFLLLEHDSNNETCYSPSDNPFPIQDFDSSDGSSQDTNNSSPSGCKKGSSAEARSSHAPPAEWKRFRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEEAGLAYDRAAFKIRGRKAKLNFPHLIGSDTQPETASVVEAFKQNSPEPLSPASSEDGLEYSPGSKKRKNLVGVLNRLAKHRSQVQVFDMGSSANDVMNVDQWWDNQSNWCS* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4616 223 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
Lja3g4616 223 Gene3D AP2/ERF domain 76 136 IPR036955 GO:0003700|GO:0006355
Lja3g4616 223 MobiDBLite consensus disorder prediction 153 177 - -
Lja3g4616 223 PANTHER DNA-BINDING DOMAIN 3 195 IPR044808 GO:0003700|GO:0009873
Lja3g4616 223 MobiDBLite consensus disorder prediction 26 76 - -
Lja3g4616 223 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
Lja3g4616 223 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 3 195 - -
Lja3g4616 223 MobiDBLite consensus disorder prediction 26 62 - -
Lja3g4616 223 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Lja3g4616 223 PRINTS Ethylene responsive element binding protein signature 117 137 IPR001471 GO:0003700|GO:0006355
Lja3g4616 223 SUPERFAMILY DNA-binding domain 77 136 IPR016177 GO:0003677
Lja3g4616 223 CDD AP2 76 137 IPR001471 GO:0003700|GO:0006355
Lja3g4616 223 Pfam AP2 domain 77 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4616 Lja-Chr3 88149051 88150002 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4616 52 140 AP2-EREBP Transcription Factor Family AT2G44840 70.787 6.06e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja3g4616 AP2 4.4e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4616 3 88149051 88150002 Lja3g4616 3 88149051 88150002 ECH