Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4615 ATGTCTTGTGATTTTTCGTCATTGGAATCCATTCAAAACTTTCTGCTTCTTGAGCTTGAACACGATAATTCCCACGTAGATTGGAATGCATCCAACAATGAAACCTGCTATTCACCCTCTTACAATCAATTTCCAATCCCCAATTTCCAGTCAAGTGGATCATCACAGGCTGTCACTAACTTAGATAGTGTTGTTGGTCCCGTGAAGAAATCACCAGGGTGCAAAAAGGGTTCCTCTGCAGCAGCGCGTGAATCCAACGCGCCACCTGTATGGAAGCGTTACAGGGGCGTGAGACGCAGACCATGGGGGAAGTTTGCAGGGGAGATAAGAGATCCAAAGAAGAACGGTGCTAGGGTTTGGCTCGGAACCTATGAGACTGAAGAGGAAGCAGCTCTAGCTTATGATAAAGCTGCTTTCAAGATGCGTGGTAGAAAGGCCAAACTCAATTTTCCCCACCTCATTGGTTCTGACTCGTTGTCTGAGACAGAGTCAGTGAGTGAGGTGACGTTTTTCAGGCAGAACTCGCCGGACCATCTTTCACCGGCTTCATCATCCGCTTCGGAGGATAGTTCTGAGTGCTCACCTGGGTCAAAGAAGAGGAAGAACCTAGTTGGAGTGTTGAATAGGTTAGCCAAGCATAGAAGCCAAGTGCAGGTGTTTGATATGGGTTCAACCACAAATGATGATGTCAATGTTGATGAATGGTGGGATAATTTGTCTAGTGATTCCGGCGTAATCTGGTGCTCATAA 750 0.4653 MSCDFSSLESIQNFLLLELEHDNSHVDWNASNNETCYSPSYNQFPIPNFQSSGSSQAVTNLDSVVGPVKKSPGCKKGSSAAARESNAPPVWKRYRGVRRRPWGKFAGEIRDPKKNGARVWLGTYETEEEAALAYDKAAFKMRGRKAKLNFPHLIGSDSLSETESVSEVTFFRQNSPDHLSPASSSASEDSSECSPGSKKRKNLVGVLNRLAKHRSQVQVFDMGSTTNDDVNVDEWWDNLSSDSGVIWCS* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4615 249 MobiDBLite consensus disorder prediction 173 192 - -
Lja3g4615 249 SMART rav1_2 93 157 IPR001471 GO:0003700|GO:0006355
Lja3g4615 249 Pfam AP2 domain 93 143 IPR001471 GO:0003700|GO:0006355
Lja3g4615 249 ProSiteProfiles AP2/ERF domain profile. 93 151 IPR001471 GO:0003700|GO:0006355
Lja3g4615 249 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Lja3g4615 249 PRINTS Ethylene responsive element binding protein signature 133 153 IPR001471 GO:0003700|GO:0006355
Lja3g4615 249 PANTHER DNA-BINDING DOMAIN 3 216 IPR044808 GO:0003700|GO:0009873
Lja3g4615 249 SUPERFAMILY DNA-binding domain 93 152 IPR016177 GO:0003677
Lja3g4615 249 Gene3D AP2/ERF domain 92 152 IPR036955 GO:0003700|GO:0006355
Lja3g4615 249 MobiDBLite consensus disorder prediction 173 199 - -
Lja3g4615 249 CDD AP2 92 153 IPR001471 GO:0003700|GO:0006355
Lja3g4615 249 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 3 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4615 Lja-Chr3 88135733 88136729 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4615 70 156 AP2-EREBP Transcription Factor Family AT2G44840 70.115 1.83e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja3g4615 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4615 K09286 - gmx:100527194 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4615 3 88135733 88136729 Lja3g4615 3 88135733 88136729 ECH
Lja3g4615 3 88135733 88136729 Lja1g2918 1 35311547 35312461 PCT