Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4611 ATGATGGACACACATTACTGGAACAGCAATATGAATGCCGCATCCGACCACTTTGAAGCCATGGCAACGACGTCATTTCAGGACACACAGGCTCCGGCAGTAGGGGTGTTCTCCCGGAATCCGAGCTTCAAGAGCATCTTCTTGGCGGATAACTGGGCAGAGCTGCCATTGAAGGAGGATGATGCCGACGACATGGTCATCTACAGCGCGTTGAGAGAGGCTGCCACCACTGGTTGGCTACCCACCAACAATAACAATGGGGTGATGGAAGTTAACACGGTTGCGAAGATGGAAAATGAGAGTGAAAACTGCAGCAGTACAGGGGCACGTGGATCACGCACCCCCACGAAGAGAGGATGGAGCTACCGGGGCGTGCGGAAGAGACCGTGGGGCAAGTATGCCGCAGAGATAAGAGACCCCAAGAAGAACGGCTCAAGGGTGTGGCTTGGGACTTATGAAACAGCGGAGGATGCAGCTTTGGCTTATGATCGAGCCGCGTTCAAAATGCGCGGCTCAAAAGCTAAGCTAAATTTTCCACACTTGATTGGCTCAATATAA 558 0.5251 MMDTHYWNSNMNAASDHFEAMATTSFQDTQAPAVGVFSRNPSFKSIFLADNWAELPLKEDDADDMVIYSALREAATTGWLPTNNNNGVMEVNTVAKMENESENCSSTGARGSRTPTKRGWSYRGVRKRPWGKYAAEIRDPKKNGSRVWLGTYETAEDAALAYDRAAFKMRGSKAKLNFPHLIGSI* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4611 185 SUPERFAMILY DNA-binding domain 122 180 IPR016177 GO:0003677
Lja3g4611 185 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
Lja3g4611 185 MobiDBLite consensus disorder prediction 101 121 - -
Lja3g4611 185 CDD AP2 122 181 IPR001471 GO:0003700|GO:0006355
Lja3g4611 185 Gene3D AP2/ERF domain 121 180 IPR036955 GO:0003700|GO:0006355
Lja3g4611 185 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Lja3g4611 185 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Lja3g4611 185 PANTHER BNAC04G53270D PROTEIN 32 182 - -
Lja3g4611 185 SMART rav1_2 121 185 IPR001471 GO:0003700|GO:0006355
Lja3g4611 185 ProSiteProfiles AP2/ERF domain profile. 121 179 IPR001471 GO:0003700|GO:0006355
Lja3g4611 185 PANTHER DNA-BINDING DOMAIN 32 182 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4611 Lja-Chr3 88070978 88071766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4611 36 185 AP2-EREBP Transcription Factor Family AT2G44840 60.000 1.13e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja3g4611 AP2 5.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4611 K09286 - gmx:100793366 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4611 3 88070978 88071766 Lja3g4611 3 88070978 88071766 ECH