Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4609 ATGGAGAGGGGTTCAGAGCTGAAGGTACTTCCTCGAACAATGCCTATCCTGCTTGAGGTATCGTCACATACAGCTGCAGCAAGAGAGGCAGATCAGAGACTAAATGGGTATGAGGTTTCCGGTGCTGGGGAGGTTTCAGCAAGAGAACTGAATCAGTTTTCAAGATCAAGGGATGTACCTGTCTCGCGTCTGGCTTCCATTAGAGAAGTGGCTCAGTTATCACATCCTCGGGTCGATTTGGTAAGAGAAGATATGGGATTCGGTTCTAGATCATCACAAGAATCTCTCTCCTTTGAGCCTATCATAACATGGAAGGGAAAGGCCTTTTTATCTGAATCAGAAGATCTGATATCTGATGTTGACACATTGAAGGAAAGCCGTGATTCATTTGAAGATGGTGCTCCGGGTTTATTTGCCGGTGCTAGTCATCCCCCAGAACCTGTTGATACAGATCTTATGCGAACAGTTTATGTGCCAATAGGTCAAAACAAATCTGAGGCTGGATGCTTAATTAAGAACTTGTCCATGAAGGGTCCTTTCATCGAAGATCTATCTATTCGTGTTCCAGCCAAGAAACCAAATCCAATTATCCTCTCCCCTCAAGAAAGCCTGGTTGACGAACTCAATGACATAGGGAACTTGTCCTCACCGTTTTCGGGTCCTCGAGTATCGCAGAATACTGAGAACTCTTTCCTCCCTCCAGACTCTGAGGAAAAAGAATGTGTGTGGGATGCTTCTTTGCCTCCTAGCGGCAATGTCAGTCCACTTAGTAGTATTGATGGTGTTTTCAGAGCAATGAGCATTGCTAATAGTTGTGCTAGTACATATCAGAGTGATGCAATCACTAGTGATGGCATGCTTAGTTTAGACAGGAACTTTGATTGTATTAAGGGGAGTGTAAAGGGGGATTCACTAGAGAGTACAAAAAGTAGTGCTAGTCGTGCAAGTGATAGCAGTGGCCTCAGTGATGACAGTAACTGGAGCAATATTACTGGAAGTGCCAATAAGCCTCACAAGGGAAATGATCCCAGGTGGAAGGCTATCCTTGCCATTCGATTGCGGGATGGAATTTTGGGCATGAGTCATTTTAGATTACTGAAGCGACTTGGATGTGGTGATATCGGAAGTGTATATCTCTCAGAACTTAGTGGAACTCGGTGTTATTTTGCAATGAAAGTCATGGATAAAGCATCCTTAGCAAGCAGAAAAAAGCTGGGCAGAGCACAGACTGAGAGGGAGATATTGCAGTTGCTGGACCATCCCTTTCTTCCAACTTTGTATACACATTTTGAGACTGACAGATTCACCTGCTTAGTAATGGAATATTGTCCTGGTGGTGATCTACACACTTTAAGGCAGCGGCAACCTGGGAAACATTTCTCTGAATATGCTGCTCGCTTTTATGCTGCTGAGGTCCTGCTTGCTCTTGAATATCTTCACATGCTTGGAGTTGTGTACAGAGACCTTAAACCTGAAAATGTATTGGTACGAGATGATGGTCACATAATGCTCTCAGATTTTGATCTTTCCCTTAGATGCACCGTATCACCAACTCTTATTAGAACTTCCTATAATGGTGACCCTTCAAAGCAGGCTGGGGGTGCATTCTGTGTTCAACCTGCTTGTATTGAGCCAACTTCAGTATGCATCCAACCGGCATGTTTTATTCCTCGGTTCTTCCCTCAGAAAAACAAGAAGTCACGGAAGCCGAGAGCTGAACCCGGGTTTCCTTGCAGCACGCTTCCAGAGCTGGTTGCTGAGCCTACTGCAGCGCGATCCATGTCCTTTGTCGGTACACACGAATACCTTGCCCCTGAGATTATCAAAGGGGAAGGTCATGGCAGTGCAGTTGATTGGTGGACATTTGGAATTTTCTTGCATGAGTTATTGTATGGTAAAACCCCTTTCAAAGGGTCTGGAAACCGTGCAACACTTTTCAATGTAGTAGGCCAGCAGCTCAAGTTTCCTGAATCACCAGCCACCAGTTATGCCGGCCGGGATCTGATTCGCGGGTTGCTGGTGAAGGAGCCGCAGCATCGTCTTGGGGTTAAGAGGGGAGCTACCGAGATCAAACAGCACCCGTTCTTTGAAGGTGTGAACTGGGCATTGATCAGATGCAGCACGCCACCGGAAGTGCCGAGACCAGTAGAAAATGAGCCGCCGCCACCAGGGAAAGTTGGATCAGTTGATAATACTGTTGGGATTGGCAGCACTAGTAAGAGGGTAGTAGGTGGTACTACTGAGATGAAGCCAGGAGGGGGTAAATATCTGGACTTTGAGTTCTTTTAG 2289 0.4596 MERGSELKVLPRTMPILLEVSSHTAAAREADQRLNGYEVSGAGEVSARELNQFSRSRDVPVSRLASIREVAQLSHPRVDLVREDMGFGSRSSQESLSFEPIITWKGKAFLSESEDLISDVDTLKESRDSFEDGAPGLFAGASHPPEPVDTDLMRTVYVPIGQNKSEAGCLIKNLSMKGPFIEDLSIRVPAKKPNPIILSPQESLVDELNDIGNLSSPFSGPRVSQNTENSFLPPDSEEKECVWDASLPPSGNVSPLSSIDGVFRAMSIANSCASTYQSDAITSDGMLSLDRNFDCIKGSVKGDSLESTKSSASRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRLRDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLASRKKLGRAQTEREILQLLDHPFLPTLYTHFETDRFTCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCTVSPTLIRTSYNGDPSKQAGGAFCVQPACIEPTSVCIQPACFIPRFFPQKNKKSRKPRAEPGFPCSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYAGRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVENEPPPPGKVGSVDNTVGIGSTSKRVVGGTTEMKPGGGKYLDFEFF* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4609 762 Gene3D Phosphorylase Kinase; domain 1 361 446 - -
Lja3g4609 762 SMART serkin_6 363 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4609 762 PANTHER FLIPPASE KINASE 1-RELATED 75 762 - -
Lja3g4609 762 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 75 762 - -
Lja3g4609 762 ProSiteProfiles Protein kinase domain profile. 363 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4609 762 MobiDBLite consensus disorder prediction 303 336 - -
Lja3g4609 762 Gene3D Transferase(Phosphotransferase) domain 1 447 517 - -
Lja3g4609 762 MobiDBLite consensus disorder prediction 216 232 - -
Lja3g4609 762 Gene3D Transferase(Phosphotransferase) domain 1 592 713 - -
Lja3g4609 762 MobiDBLite consensus disorder prediction 216 235 - -
Lja3g4609 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Lja3g4609 762 SUPERFAMILY Protein kinase-like (PK-like) 344 720 IPR011009 -
Lja3g4609 762 MobiDBLite consensus disorder prediction 302 340 - -
Lja3g4609 762 Pfam Protein kinase domain 364 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4609 762 Pfam Protein kinase domain 593 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4609 762 CDD STKc_phototropin_like 361 715 - -
Lja3g4609 762 MobiDBLite consensus disorder prediction 711 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4609 Lja-Chr3 87989190 87993559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4609 1 762 AGC Kinase Gene Family AT2G44830 65.987 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja3g4609 Pkinase 1.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4609 - - mtr:MTR_8g006870 1247.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4609 3 87989190 87993559 Lja3g4609 3 87989190 87993559 ECH
Lja3g4609 3 87989190 87993559 Lja1g2923 1 35397496 35404132 PCT