Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4598 ATGGCGAATCGTGGATCTGAACCCGAAATGGAAGAAAAATCCTGGTGTCTCTTTTCAACCTTGCTTCGAATCGGCCACGCCGTCGATTTCCACCACCTCGCTTCGCGGTGTCCATTTTTCACTGCGACGCCGGAACTCGTTCTCCACCTCGCCTCACTCCCCGATTCTCCTCTCGCCGTCACCGGTGAAGGACTCGTTACGCCCTCCGCCGTCGCTGTTTACGCTCTCGGAAGGTTTTTCTCTGTCCAGTTCCAGCAGCAGCATCATCATCCCTGCCGGAAGCGGAAGTTGTTTTTGGATTCCAACGAAGGTGGAAGAGATCGGAAGAGGTTGGCAATTTGTGATGGAGTTCCAGATATTTCCTTTGAGAGTTTTTCTGATACTGCAAAGGCTATGTTGGGAAGAAATTTCCCTACAATAAATTTTGAATCACGGATCATGGATGGAGCGAATTCTTTTATCCCATTACGTATTGGTGCCAATGGAGTGTGTTCAGGTTGTCCAGGGCGAAGTTTTGAACATAGGGAAGTTGGTAATGATGCCAGCACAAGCATGTTAGGAGGAGAGATTTCTGGATCGGTGATTAAGACTAGTGATCATTTGTTCATGACTGGCAGTGACTTGACTTCTCAGAAGAAACCAGGAATAGGTAAATTTGTGGGATGTAATAATATCTTTGGGAATCTTACTCTGACAACTAGTCTCCCAGATTCCTGGCCATGTGATTTTGGTGTTGTTGATGGCACTGGACTTGGGAAGAAAGTGGAGCATGAATATCCTGAACAGAACATTACTCATCCTGTGGGTGATGGTGATATTTGTAAAACTGATACCTGCGAAGATCCAGCAAGAGAATCTAATGAAAATGAAGAAGTGGAAAGTGATTTAAAGAAAGGTTTGATTGATTCTGGCACAAATAAAGACATGGAAGATGTTGCTCAGATGGCCAATCCTCCACTTTTTGGAGAACTGACTAAATGTTTGGAAACAAAAACCCATGTCCATGTGTTCGGTTTGGATAAAAATGAGACAACGAGAAACATCACAACCCAGTCTACTACCAACAAAATAATTAAGTCTTCAAATCCAAATCTTCTTTTGAAATCTTCTGATAATGCTCCCAAAAATGTTAATCAATGTAAAAATGATAAGAAACTCATTATGAAGAACAAGTTAAAGCAAAGGTGTGCAGAAAACATGGTTGAGCCAGAAACTTCCATGATTTGTAAGGTGGAGAAAAAATCGTATCCATCTTTTGAATCTTTTACCATAGAGGAAGAAGAAGGTTCAGGTGGTTATGGCACAGTTTACCGAGCTCGAAGAATTACTGATGGAAGAAGAGTTGCAATAAAATGTCCGCATAATAATGCTCCTAAACACCATGTAAATAATGAGCGGAATATGCTTGAGCGTTTTGGGGGTAGAAATTCTATAATAAAATTTGAAGGTTCTTTCAGAAGTGACAGCAGTGACTGCTTTGTTTTAGAACATGTTGAGCATGACAGACCTGAGGTTTTGAAAAGAGAAATCGATATAAATCAGCTTCAGTGGTATGGGTATTGCATGTTCAGGGCACTTGCGTCCTTGCACAGAGAGGGAGTCGTTCACAGGGATGTTAAACCTGGGAATTTCCTTTTTTCCCAAAAGATGAACAAAGGCTACCTTATTGACTTCAACCTTGCCACGGATTTAAAGCAGAAGCACAACATTGGAAGTAAATCAAAACCAGGCCTTGATGCATCCAATAAAATTCCTCTGGCTTCTGGTTCTGCTCCGGTGGTCCAAGACAAGAACCTTGGAGGGAGCAAGTCTCTAACATCGAATAAAAGGGACTTGGCAAATTATAAGAAATATTCTGAACTTAATAGGCATGTGAAGCAAAAGGCTTATGCTGGTCCTCTAAAAACTTGTCTAGATAAGGCTGGTGGGAGTTTACTTAGAGCACAAGGAACAGATGGCTCAGGTGTAACCTCTGTAAAAGATGTTACTAGCACTAGGACTGCTTCTGCCGAAAGGCTTAGGGAACCAGTACCTTCTTGCAGTAGAAAGGAGTATCGCGACCTTGTGCAGACAACGTTGCAATATGCGAGCAGTAGTTCAATAAAAGGTCCTGCTTCTCAAAGGAAAAGGGTTACTGCTCCTTCCGGCAAGATAGATAGCAAGACTGTTTATATTACGCCGATGCCTCTACATCCTACAGTTCCAGCAGCATTTTTAAGAAGCAAAGGAGATGGAAAACATAAAAAAGAGGGTTCATGTGTTGGAACCAAGGGATTCCGTGCCCCAGAGGTTTTGTTAAGGTCTCAGTTTCAGGGAACTAAGGCTGATATTTGGTCTGCTGGAGTCACTCTACTCTACTTGGTGATCGGGAAAAGTCCTTTCACTGGAGAACCAGAACAGAATCTGCAAGAAATTGCCAAATTGCGGGGCAGTGAAGAGCTTTGGGAAGTCGCAAGGCTACATGATCGCGAATCATCTTTTCCTGGGGAGTTATTCGATCGCCGGTACTTGCAATCATGGGACATGGAAAGTTGGTGTAAATTTCACACAAAGAGACCAGAGTTTCATCAGAAACTCCCAAAATCATTATTTGATTTAATAGACAAGTGTCTAACAGTAAACCCAAGAAGTAGGATAAGTGTTGAGGAAGTTCTAAGGCATGAATTCTTCACCCCATGTAATGAAGCCATGAGGAAGCAAAGGATGATTCGACGCGGTCTCAACTCGGAGAATGCAGCCTATAGAACAGTCTCGGATGAGTTTTTGGTGGCAGCCACTGGCACATGA 2787 0.4277 MANRGSEPEMEEKSWCLFSTLLRIGHAVDFHHLASRCPFFTATPELVLHLASLPDSPLAVTGEGLVTPSAVAVYALGRFFSVQFQQQHHHPCRKRKLFLDSNEGGRDRKRLAICDGVPDISFESFSDTAKAMLGRNFPTINFESRIMDGANSFIPLRIGANGVCSGCPGRSFEHREVGNDASTSMLGGEISGSVIKTSDHLFMTGSDLTSQKKPGIGKFVGCNNIFGNLTLTTSLPDSWPCDFGVVDGTGLGKKVEHEYPEQNITHPVGDGDICKTDTCEDPARESNENEEVESDLKKGLIDSGTNKDMEDVAQMANPPLFGELTKCLETKTHVHVFGLDKNETTRNITTQSTTNKIIKSSNPNLLLKSSDNAPKNVNQCKNDKKLIMKNKLKQRCAENMVEPETSMICKVEKKSYPSFESFTIEEEEGSGGYGTVYRARRITDGRRVAIKCPHNNAPKHHVNNERNMLERFGGRNSIIKFEGSFRSDSSDCFVLEHVEHDRPEVLKREIDINQLQWYGYCMFRALASLHREGVVHRDVKPGNFLFSQKMNKGYLIDFNLATDLKQKHNIGSKSKPGLDASNKIPLASGSAPVVQDKNLGGSKSLTSNKRDLANYKKYSELNRHVKQKAYAGPLKTCLDKAGGSLLRAQGTDGSGVTSVKDVTSTRTASAERLREPVPSCSRKEYRDLVQTTLQYASSSSIKGPASQRKRVTAPSGKIDSKTVYITPMPLHPTVPAAFLRSKGDGKHKKEGSCVGTKGFRAPEVLLRSQFQGTKADIWSAGVTLLYLVIGKSPFTGEPEQNLQEIAKLRGSEELWEVARLHDRESSFPGELFDRRYLQSWDMESWCKFHTKRPEFHQKLPKSLFDLIDKCLTVNPRSRISVEEVLRHEFFTPCNEAMRKQRMIRRGLNSENAAYRTVSDEFLVAATGT* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4598 928 ProSiteProfiles Protein kinase domain profile. 422 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4598 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672|GO:0006468
Lja3g4598 928 SMART serkin_6 422 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4598 928 Gene3D Transferase(Phosphotransferase) domain 1 385 576 - -
Lja3g4598 928 MobiDBLite consensus disorder prediction 650 670 - -
Lja3g4598 928 Gene3D Transferase(Phosphotransferase) domain 1 735 920 - -
Lja3g4598 928 Pfam Protein kinase domain 749 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4598 928 Pfam Protein kinase domain 424 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4598 928 PANTHER CASEIN KINASE-RELATED 380 902 - -
Lja3g4598 928 SUPERFAMILY Protein kinase-like (PK-like) 419 903 IPR011009 -
Lja3g4598 928 MobiDBLite consensus disorder prediction 649 679 - -
Lja3g4598 928 PANTHER CELL DIVISION CYCLE 7-RELATED PROTEIN KINASE 380 902 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4598 Lja-Chr3 87843398 87849736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4598 402 572 Core Cell Cycle Gene Families AT4G28980 27.473 1.32e-10 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-2 Lja3g4598 Pkinase 5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4598 K02214 - gmx:100783107 1058.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4598 3 87843398 87849736 Lja3g4598 3 87843398 87849736 ECH