Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4594 ATGGAAGGGGAAAGAGATCATGTTCCCAATTTTGAGCTTCAAGTTTCATTCACAAACACTCCTCAACCCATAACCGAAATGGGTTTTGTTGATCATTTTGAAGAAAACCAGGTTCTTAGCTTCTTGGCTCCCTCTGCACAATCCCAATCCTCTCAACCTCTAACTGGCGGCGGCAGCAACGACGCATCCACCACCGCGGCAGCCTCAACTCTTGGCTTCAGCCATGACGACCTTGTCAACAGAACTTCTTGGAATAGTAACGAGCAGTTTCAGGTGAGAACTATTGATCCGAAGGCTGTCAGTGATGAAAATTGCACTGGAAATACTAGTGATGGGAACAACACATGGTGGAGGAGTGGAGGGTCAGAGAAGAGCAAGGTGAAAGTGAGGAGGAAGCTGAGAGAGCCAAGGTTTTGTTTCCAAACAAGAAGTGATGTGGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGTCAGAAAGTTGTCAAGAATAGCCTTCATCCAAGAAGTTATTACCGTTGCACCCATAGCAATTGCAGGGTGAAAAAAAGAGTTGAACGTCTCTCAGAAGATTGTCGTATGGTGATAACAACGTATGAAGGTAGACACAATCACTCTCCTTGCGACGAATCAAATTCATCTGAACATGAATGTTTTACCTCTTTTTGA 672 0.442 MEGERDHVPNFELQVSFTNTPQPITEMGFVDHFEENQVLSFLAPSAQSQSSQPLTGGGSNDASTTAAASTLGFSHDDLVNRTSWNSNEQFQVRTIDPKAVSDENCTGNTSDGNNTWWRSGGSEKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDESNSSEHECFTSF* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4594 223 MobiDBLite consensus disorder prediction 44 65 - -
Lja3g4594 223 Pfam WRKY DNA -binding domain 150 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g4594 223 SUPERFAMILY WRKY DNA-binding domain 141 207 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g4594 223 MobiDBLite consensus disorder prediction 101 121 - -
Lja3g4594 223 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 14 221 IPR044810 GO:0003700
Lja3g4594 223 ProSiteProfiles WRKY domain profile. 144 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g4594 223 PANTHER WRKY TRANSCRIPTION FACTOR 12-RELATED 14 221 - -
Lja3g4594 223 SMART WRKY_cls 149 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g4594 223 Gene3D WRKY domain 136 202 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4594 Lja-Chr3 87791157 87796437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4594 3 223 WRKY Transcription Factor Family AT2G44745 55.263 4.65e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja3g4594 WRKY 1.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g4594 - - gmx:100800671 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4594 3 87791157 87796437 Lja3g4594 3 87791157 87796437 ECH
Lja3g4594 3 87791157 87796437 Lja1g2938 1 35686680 35694183 PCT